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call-sSNV v6.0.0-rc.1
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@sorelfitzgibbon sorelfitzgibbon released this 08 Feb 23:58
· 745 commits to main since this release
v6.0.0-rc.1
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Learn about vigilant mode.

Changed

  • Update README: add Pipeline Steps and Tool descriptions
  • Update to use set_resources_allocation from pipeline-Nextflow-config repo
  • Update SAMtools to v1.16.1
  • Switch Docker Hub images to GitHub packages.
  • Remove redundant directories in log output directories and intermediate directories.
  • Specify task.index in log output directories.

Added

  • Add QC output filteringStats.tsv from Mutect2's process run_FilterMutectCalls_GATK.
  • Add contamination_table input to input.yaml. Contamination estimate table was generated from CalculateContamination from GATK.
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