Using mamba to install packages in BacDock and parameter option "-fksSL" in curl snpEff #4
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update-alternatives for python3
Changed software versions picard 2.9.0 to 2.26.11, samtools 1.3.1 to 1.14, vcftools 0.1.14 to 0.1.16, trimomatic 0.38 to 0.39
to access vcf2fasta using egeza repository
version 2.9.2 to 2.11.3
This was supposed to be there in original repository
Include changes made due software dependencies. Changes incorporated when creating the image "bacterial_genomics_latest-2022-07-13-40d2dfb4033a.simg" created on the bst
According to the images we build, anaconda replaced with miniconda and conda packages installed with mamba.
Replaced baseName with simpleName
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Due to package updates there are conflicts in the v0 dependencies.
More than a single version of a package are installed in v0