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@uio-cels

Centre for Computational Inference in Evolutionary Life Science

Bringing together biology, statistics and computational sciences

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  1. NucDiff NucDiff Public

    In-depth characterization and annotation of differences between two sets of DNA sequences

    Python 60 10

  2. genomicgraphcoords genomicgraphcoords Public

    Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes

    Python 11

  3. OffsetBasedGraph OffsetBasedGraph Public

    Python package for handling genomic offset-based graphs

    Python 3 1

  4. Repeats Repeats Public

    Pipeline for detecting repetetive elements in genomes.

    Shell 2 2

  5. Solbakken_RNAseq Solbakken_RNAseq Public

    Data related to Solbakken et al 2019, infection and vaccination of Atlantic cod

    1

  6. TandemRepeats TandemRepeats Public

    Jupyter Notebook 1

Repositories

Showing 10 of 12 repositories
  • NucDiff Public

    In-depth characterization and annotation of differences between two sets of DNA sequences

    uio-cels/NucDiff’s past year of commit activity
    Python 60 MPL-2.0 10 14 1 Updated May 18, 2020
  • Nilsson_innate_and_adaptive Public

    Repository for Nilsson et al.: The genome of the great gerbil reveals species-specific duplication of an MHCII gene

    uio-cels/Nilsson_innate_and_adaptive’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 16, 2019
  • teleost-repeats Public

    Repo for "Genomic repeat landscape evolution across the teleost fish lineages" (Reinar et al. 2019)

    uio-cels/teleost-repeats’s past year of commit activity
    R 1 1 0 0 Updated Sep 12, 2019
  • Solbakken_RNAseq Public

    Data related to Solbakken et al 2019, infection and vaccination of Atlantic cod

    uio-cels/Solbakken_RNAseq’s past year of commit activity
    1 0 0 0 Updated Aug 12, 2019
  • OffsetBasedGraph Public

    Python package for handling genomic offset-based graphs

    uio-cels/OffsetBasedGraph’s past year of commit activity
    Python 3 1 0 0 Updated Mar 13, 2019
  • Solbakken_TLRs Public

    Repository for Solbakken et al: Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions (Scientific reports)

    uio-cels/Solbakken_TLRs’s past year of commit activity
    0 CC0-1.0 0 1 0 Updated Sep 3, 2018
  • uio-cels/TandemRepeats’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 27, 2018
  • genomicgraphcoords Public

    Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes

    uio-cels/genomicgraphcoords’s past year of commit activity
    Python 11 0 0 0 Updated May 2, 2017
  • gendatafetcher Public

    A small set of utility functions for using the UCSC mysql database and sequence API, focused around getting data relevant for graph-based genomes.

    uio-cels/gendatafetcher’s past year of commit activity
    Python 1 0 0 0 Updated Nov 30, 2016
  • vg Public Forked from vgteam/vg

    tools for working with variation graphs

    uio-cels/vg’s past year of commit activity
    C++ 0 MIT 205 0 0 Updated Sep 12, 2016

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