Data related to Solbakken et al 2016, infection and vaccination of Atlantic cod. In this repository you will find all scripts and output data related to two RNAseq studies in Atlantic cod. Paper 1 Francisella: https://doi.org/10.1016/j.cbd.2019.04.004 Paper 2: Vibriosis vaccine: https://doi.org/10.1016/j.cbd.2019.100597 Sequencing data ENA: PRJEB31369 and PRJEB31396 Genome guided "de novo" RNAseq assembly here: https://doi.org/10.6084/m9.figshare.8215994.v1