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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 40 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 8 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 4

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 93 repositories
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 4 0 51 (1 issue needs help) 6 Updated Dec 17, 2024
  • dracarys Public

    🐲 DRAGEN workflow tidying 🔥

    umccr/dracarys’s past year of commit activity
    R 0 0 26 0 Updated Dec 17, 2024
  • RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    umccr/RNAsum’s past year of commit activity
    R 7 4 16 0 Updated Dec 17, 2024
  • sigrap Public

    🎶 Wrappers for somatic mutation signature analysis tools

    umccr/sigrap’s past year of commit activity
    R 5 0 2 0 Updated Dec 17, 2024
  • htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    umccr/htsget-rs’s past year of commit activity
    Rust 40 MIT 9 17 5 Updated Dec 17, 2024
  • gpgr Public

    📚 Genomics Platform Group Reporter

    umccr/gpgr’s past year of commit activity
    R 8 1 1 0 Updated Dec 17, 2024
  • cwl-novice-tutorial Public

    CWL Novice Tutorial

    umccr/cwl-novice-tutorial’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 17, 2024
  • sk-explore Public
    umccr/sk-explore’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 16, 2024
  • conda_recipes Public

    Conda recipes for GitHub tools not available from conda-forge/bioconda

    umccr/conda_recipes’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 16, 2024
  • umccr/samplesheet-check-frontend’s past year of commit activity
    JavaScript 0 0 2 2 Updated Dec 15, 2024

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