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cttso glue fails when lane attribute is not found in the bclconvert settings #545

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alexiswl opened this issue Sep 15, 2024 · 0 comments · Fixed by #552
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cttso glue fails when lane attribute is not found in the bclconvert settings #545

alexiswl opened this issue Sep 15, 2024 · 0 comments · Fixed by #552
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bug Something isn't working pipeline Workflow/Pipeline Manager

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@alexiswl
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This is actually an issue for a lot of glue analysis since the fastqlistrow rgid generation in the clag glue set relies on the lane being present in the samplesheet.

We can update the bclconvert manager to add the lane attribute in before placing the samplesheet in the event.

Will need to read the runinfo.xml to determine the number of lanes present

@alexiswl alexiswl added the bug Something isn't working label Sep 15, 2024
@alexiswl alexiswl self-assigned this Sep 15, 2024
@alexiswl alexiswl linked a pull request Sep 15, 2024 that will close this issue
@victorskl victorskl added the pipeline Workflow/Pipeline Manager label Sep 15, 2024
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