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BCLConvert manager fails to get number of lanes from runinfo #647

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alexiswl opened this issue Nov 3, 2024 · 1 comment · Fixed by #648
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BCLConvert manager fails to get number of lanes from runinfo #647

alexiswl opened this issue Nov 3, 2024 · 1 comment · Fixed by #648
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bug Something isn't working pipeline Workflow/Pipeline Manager

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alexiswl commented Nov 3, 2024

Only an issue when the SampleSheet doesn't contain lane values in the BCLConvert_Data section
@alexiswl alexiswl added the bug Something isn't working label Nov 3, 2024
@alexiswl alexiswl self-assigned this Nov 3, 2024
@alexiswl alexiswl linked a pull request Nov 3, 2024 that will close this issue
Need to set 'keep_flowcell_layout' to true for wrapica collection of runinfo xml #648
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@victorskl victorskl added the pipeline Workflow/Pipeline Manager label Nov 3, 2024
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Related https://umccr.slack.com/archives/C03ABJTSN7J/p1730674628313319?thread_ts=1730499622.014949&cid=C03ABJTSN7J

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Need to set 'keep_flowcell_layout' to true for wrapica collection of runinfo xml umccr/orcabus
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