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  1. gepard gepard Public

    Genome Pair Rapid Dotter

    Java 62 16

  2. deepnog deepnog Public

    Protein orthologous group assignment with deep learning

    Python 26 8

  3. phenotrex phenotrex Public

    Forked from LokiLuciferase/phenotrex

    Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn

    Python 8 4

  4. PyCoMo PyCoMo Public

    Jupyter Notebook 4

  5. PICA PICA Public

    Microbial phenotype prediction - succeeded by phenotrex ->

    Python 3 4

  6. ScyNet ScyNet Public

    ScyNet: Visualisation of community metabolic models in Cytoscape

    Java 2

Repositories

Showing 10 of 11 repositories
  • PyCoMo Public
    univieCUBE/PyCoMo’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Dec 12, 2024
  • deepnog Public

    Protein orthologous group assignment with deep learning

    univieCUBE/deepnog’s past year of commit activity
    Python 26 BSD-3-Clause 8 5 1 Updated Jul 25, 2024
  • ScyNet Public

    ScyNet: Visualisation of community metabolic models in Cytoscape

    univieCUBE/ScyNet’s past year of commit activity
    Java 2 MIT 0 0 0 Updated Jul 23, 2024
  • BMDMmodeling Public

    Scripts and data from modeling of bone-marrow-derived macrophages

    univieCUBE/BMDMmodeling’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Jul 8, 2024
  • genskew Public

    GenSkew is an application for computing and plotting nucleotide skew data.

    univieCUBE/genskew’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Oct 11, 2022
  • phenotrex Public Forked from LokiLuciferase/phenotrex

    Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn

    univieCUBE/phenotrex’s past year of commit activity
    Python 8 5 0 0 Updated Sep 10, 2021
  • gepard Public

    Genome Pair Rapid Dotter

    univieCUBE/gepard’s past year of commit activity
    Java 62 MIT 16 3 0 Updated Sep 2, 2021
  • megalodon Public Forked from nanoporetech/megalodon

    Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

    univieCUBE/megalodon’s past year of commit activity
    Python 0 30 0 0 Updated Mar 23, 2021
  • taiyaki Public Forked from nanoporetech/taiyaki

    Training models for basecalling Oxford Nanopore reads

    univieCUBE/taiyaki’s past year of commit activity
    Python 0 43 0 0 Updated Mar 19, 2021
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    univieCUBE/bioconda-recipes’s past year of commit activity
    Shell 0 3,323 0 0 Updated Mar 3, 2021
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