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What's the function of "-validatePairs"? #60

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Siteng999 opened this issue Dec 7, 2023 · 0 comments
Open

What's the function of "-validatePairs"? #60

Siteng999 opened this issue Dec 7, 2023 · 0 comments

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@Siteng999
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Dear Trimmomatic,

I am using Trimmomatic-0.39, and there is a parameter [-validatePairs] that I am not familiar with. Could you please explain the purpose of this parameter?

Thank you.

trimmomatic 0.39 hdfd78af_2 bioconda
Usage:
PE [-version] [-threads ] [-phred33|-phred64] [-trimlog ] [-summary ] [-quiet] [-validatePairs] [-basein | ] [-baseout | ] ...
or:
SE [-version] [-threads ] [-phred33|-phred64] [-trimlog ] [-summary ] [-quiet] ...
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@Siteng999