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38 Open 24 Closed
38 Open 24 Closed
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Issues list

PolyG
#70 opened Nov 6, 2024 by GimenaA
Differences in trimming between Novaseq and Nextseq outputs
#68 opened Jul 4, 2024 by peterashtonEMHP
Installing
#66 opened Apr 15, 2024 by lynneitelson
False positive：java.io.FileNotFoundException: /tools/Trimmomatic-0.39/adapters.fa (No such file or directory)
#65 opened Apr 9, 2024 by Warelock
Not executable - Reg.
#64 opened Apr 7, 2024 by bioramg
1
Nextera Adapters sequences.
#63 opened Feb 5, 2024 by Kauthar-Omar
Potential add on to Log File
#62 opened Jan 24, 2024 by AAA-3
Error in tempfile()
#61 opened Dec 14, 2023 by tdyoshida
What's the function of "-validatePairs"?
#60 opened Dec 7, 2023 by Siteng999
What is the extra 1 base in the Truseq adapter file (TruSeq3-PE-2.fa)
#58 opened Nov 3, 2023 by wjlim
Foward only surviving reads but no reverse only surviving and no dropped reads
#56 opened Oct 25, 2023 by Catv97
2
question about ILLUMINACLIP 2:30:10
#52 opened Jul 18, 2023 by ghost
Trimmomatic drops 50% of reads
#51 opened Jun 25, 2023 by RacheliHadjez
Question about dealing with 10x data on trimmomatic
#47 opened Jan 31, 2023 by mat10d
Trimmomatic parallel de/compression
#46 opened Jan 9, 2023 by fgvieira
if the adapter.fa is needed and when to set keepbothreads TRUE
#45 opened Dec 8, 2022 by taryl
Negative Value of "Input Read Pairs" and "Both Surviving" in log file
#44 opened Dec 1, 2022 by lxwgcool
2
2nd paired fastq is empty
#43 opened Nov 13, 2022 by dmncyap
Quality score autodetection fails for Element Biosciences AVITI data
#42 opened Oct 31, 2022 by michellescribner
1
paired read assignation
#41 opened Oct 20, 2022 by PavelEG
Run time error exception occur
#40 opened Oct 8, 2022 by GUNAJIV
Overrepresented sequences remain after adapter trimming
#39 opened Sep 20, 2022 by judy-m2
Trimmomatic for MGIseq
#38 opened Sep 19, 2022 by SergeyBaikal
Suggestion of updates to the README.md
#37 opened Aug 1, 2022 by nicolasDelhomme
Build issue with JAVA Version
#35 opened Jun 20, 2022 by bevsxyz
1
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