Jenkins install build 1620.

usegalaxy-au · Sep 18, 2024 · 0423650 · 0423650
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7799,3 +7799,4 @@ Update	210	18/09/24 15:12:31	scanpy_inspect	False	Installed	iuc	18262103fa61	182
 Update	210	18/09/24 15:31:12	scanpy_normalize	False	Installed	iuc	5dada6f76047	5dada6f76047		6/6		Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_210/install_log.txt
 Update	210	18/09/24 16:13:12	scanpy_plot	False	Installed	iuc	2dfb2227a16c	2dfb2227a16c		38/38		Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_210/install_log.txt
 Update	210	18/09/24 16:37:11	scanpy_remove_confounders	False	Installed	iuc	b70219da4a96	b70219da4a96		6/6		Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_210/install_log.txt
+Install	1620	19/09/24 08:55:15	artic_minion	True	Installed	iuc	468b90c41cde	468b90c41cde				Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1620/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,18 +2,18 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 3f3e247c053d
-  - 78c75f134c16
+  - 4efdca267d51
   - c2ef298da409
+  - 78c75f134c16
+  - 3f3e247c053d
   - 6e9aea89e388
-  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -26,8 +26,8 @@ tools:
 - name: aegean_locuspocus
   owner: iuc
   revisions:
-  - c4ac24510b55
   - 1fdc517743e6
+  - c4ac24510b55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_parseval
@@ -40,16 +40,16 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - fe3ca740a485
   - cd2480f35935
-  - 3e1f6f6d557e
-  - 1aae04680c4b
-  - b5d8e5475247
-  - 44018dd6b447
   - 4f2967b27e67
-  - a79ee60b6926
+  - 44018dd6b447
   - f29602ae449e
+  - fe3ca740a485
+  - b5d8e5475247
   - 133f36c29579
+  - 1aae04680c4b
+  - a79ee60b6926
+  - 3e1f6f6d557e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -63,33 +63,33 @@ tools:
   owner: bgruening
   revisions:
   - 7be22100e5e1
-  - 6519ebe25019
   - dc027fa56d55
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - 28433faa6e42
-  - 09855551d713
   - ca6d970d931c
+  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - da5f1924bb2e
   - 728dacaf08a9
-  - 92eee5f31117
   - d77802fe76f7
+  - 92eee5f31117
+  - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - 8fd427007e93
-  - 7355bbf5e05f
   - fe48aa4ccd5e
+  - 7355bbf5e05f
+  - 8fd427007e93
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -115,16 +115,16 @@ tools:
   owner: bgruening
   revisions:
   - 8e9e228c54c4
-  - 7ccc6234b54e
   - 1ac12c0cc7a0
+  - 7ccc6234b54e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
-  - 9d1fbff733cf
   - d9c3016f7283
+  - 9d1fbff733cf
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -148,61 +148,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - 9c15ca7e764e
   - 3bbe70fef6df
   - b6b5cd37f2a2
-  - 756376aeb1ae
   - 9f2455341fac
-  - 582fd74dc2a1
-  - 9c15ca7e764e
+  - 756376aeb1ae
   - 14f588312c56
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - 30fb23d4c31c
+  - 8e1ace8f77c6
   - 989f7c061f35
   - 0ffe5be70caf
   - 73428a792541
-  - 8e1ace8f77c6
   - a230ea445788
-  - 30fb23d4c31c
   - 1691af4a0d17
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 494f0bb4a993
-  - 5a5ae61da69c
   - 30f08d74024f
-  - e94187d661df
-  - 57c6718cbfcc
   - 563a19373357
+  - e94187d661df
   - 0418d28136de
+  - 5a5ae61da69c
+  - 494f0bb4a993
+  - 57c6718cbfcc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f31125bb85ea
-  - 1bc5a03faf2e
-  - 7abc5f6dd595
   - 4b96ced19f75
-  - d6c7106b7b2e
   - f77d7b685bb3
+  - 7abc5f6dd595
+  - d6c7106b7b2e
   - 2bba2ff070d9
+  - 1bc5a03faf2e
+  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - b3cf4684e9c7
+  - fed64e676186
   - 52af33194019
-  - 54961e026fe4
+  - d3af38b9c7e1
   - d77fdcca400e
-  - b3cf4684e9c7
+  - 54961e026fe4
   - 520e30695ec3
-  - d3af38b9c7e1
-  - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -228,10 +228,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - ef2ad746b589
-  - 43798b4caee0
   - 602de62d995b
   - 8b3e3657034e
+  - ef2ad746b589
+  - 43798b4caee0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -255,16 +255,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - 74810db257cc
   - c55643c3d813
   - 98cafcbd2578
+  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -282,26 +282,26 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
   - 370c210d9541
-  - d46d803ca6cc
   - 3c1a01127868
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - b815ec682418
-  - 033755194fe9
-  - c8ac28e8ac44
   - e95d52d295d7
   - 624606f7c996
+  - c8ac28e8ac44
+  - b815ec682418
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -337,11 +337,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - a17498c603ec
-  - d643e3b03500
   - 8a22554cdde2
   - bf68eb663bc3
+  - d643e3b03500
   - eaee459f3d69
+  - a17498c603ec
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -353,15 +353,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -381,20 +381,20 @@ tools:
   revisions:
   - cfcf33df7fc0
   - 5b80f544c67f
-  - 5a29ab10dba6
   - 8f92c2b26e6d
-  - 5c7b70713fb5
   - 68693743661e
   - 268d162b9c49
   - 9473cd297a76
+  - 5a29ab10dba6
+  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
-  - 2b3e65a4252f
   - 5fab4f81391d
+  - 2b3e65a4252f
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -419,17 +419,17 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - d03af1c7002c
-  - 51dd22484644
+  - 45083d070fb8
+  - 200c378d85f3
+  - ba6f87115e13
   - e1a9d6fd258d
+  - 51dd22484644
+  - 37213cf56392
   - 4839e590cb26
+  - 037a11682176
   - ac8250086ac3
-  - 200c378d85f3
   - 809dfc93d593
-  - 37213cf56392
-  - 037a11682176
-  - ba6f87115e13
-  - 45083d070fb8
+  - d03af1c7002c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel