Jenkins install build 1390.

usegalaxy-au · Jan 15, 2024 · 0746461 · 0746461
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6137,3 +6137,4 @@ Update	177	20/12/23 22:47:34	samtools_split	False	Tests failed	devteam	bd850490c
 Update	177	20/12/23 22:48:19	unicycler	False	Installed	iuc	8f9f06995f98	8f9f06995f98				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
 Install	1386	22/12/23 09:45:06	seq_filter_by_id	False	Installed	peterjc	85ef5f5a0562	85ef5f5a0562		6/6	6/6	Filter and Sort	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1386/install_log.txt
 Install	1388	15/01/24 11:12:44	pharokka	True	Tests failed	iuc	2f40d2ccb0eb	latest	Staging Testing	0/2		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1388/install_log.txt
+Install	1390	15/01/24 13:09:19	data_manager_pharokka	True	Shed-tools error	iuc	50caca83e7c9	50caca83e7c9	Production Installation	0/0		None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1390/install_log.txt
diff --git a/requests/pharokka_dm.yml b/requests/pharokka_dm.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - c2ef298da409
-  - 3f3e247c053d
-  - 4efdca267d51
   - 78c75f134c16
   - 6e9aea89e388
+  - 3f3e247c053d
+  - 4efdca267d51
+  - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,30 +36,30 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 44018dd6b447
-  - fe3ca740a485
-  - b5d8e5475247
-  - cd2480f35935
-  - 133f36c29579
+  - 3e1f6f6d557e
   - 1aae04680c4b
   - 4f2967b27e67
-  - 3e1f6f6d557e
+  - 133f36c29579
+  - fe3ca740a485
+  - 44018dd6b447
   - f29602ae449e
+  - b5d8e5475247
+  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
   - 6519ebe25019
-  - 7be22100e5e1
   - dc027fa56d55
+  - 7be22100e5e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
@@ -79,8 +79,8 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 8fd427007e93
   - fe48aa4ccd5e
+  - 8fd427007e93
   - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -106,8 +106,8 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
   - 9d1fbff733cf
+  - 63662ae295d6
   - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -126,42 +126,42 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
-  - 14f588312c56
   - 582fd74dc2a1
+  - 3bbe70fef6df
+  - 756376aeb1ae
   - b6b5cd37f2a2
   - 9f2455341fac
-  - 756376aeb1ae
+  - 14f588312c56
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - 30fb23d4c31c
-  - 1691af4a0d17
-  - 989f7c061f35
-  - 73428a792541
   - 0ffe5be70caf
+  - 989f7c061f35
   - a230ea445788
+  - 73428a792541
+  - 1691af4a0d17
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
   - e94187d661df
+  - 494f0bb4a993
+  - 30f08d74024f
   - b69c46064ec7
   - 5a5ae61da69c
   - 563a19373357
-  - 494f0bb4a993
-  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 1bc5a03faf2e
-  - d6c7106b7b2e
   - f31125bb85ea
+  - d6c7106b7b2e
+  - 1bc5a03faf2e
   - 2bba2ff070d9
   - f77d7b685bb3
   - 7abc5f6dd595
@@ -170,12 +170,12 @@ tools:
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 520e30695ec3
+  - 52af33194019
   - b3cf4684e9c7
   - 54961e026fe4
-  - 52af33194019
   - d3af38b9c7e1
   - fed64e676186
+  - 520e30695ec3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -187,8 +187,8 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 07d7991bf205
   - 79261884facd
+  - 07d7991bf205
   - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -201,10 +201,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 43798b4caee0
   - 8b3e3657034e
-  - ef2ad746b589
   - 602de62d995b
+  - 43798b4caee0
+  - ef2ad746b589
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -222,16 +222,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - c55643c3d813
-  - 74810db257cc
   - 98cafcbd2578
+  - 74810db257cc
+  - c55643c3d813
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -256,16 +256,16 @@ tools:
 - name: maker
   owner: iuc
   revisions:
+  - 3c1a01127868
   - 370c210d9541
   - d46d803ca6cc
-  - 3c1a01127868
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -295,11 +295,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - a17498c603ec
   - 8a22554cdde2
   - d643e3b03500
-  - a17498c603ec
-  - eaee459f3d69
   - bf68eb663bc3
+  - eaee459f3d69
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -311,15 +311,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -331,22 +331,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 5a29ab10dba6
-  - cfcf33df7fc0
-  - 268d162b9c49
+  - 68693743661e
   - 5c7b70713fb5
-  - 8f92c2b26e6d
+  - 5a29ab10dba6
   - 9473cd297a76
-  - 68693743661e
   - 5b80f544c67f
+  - 8f92c2b26e6d
+  - 268d162b9c49
+  - cfcf33df7fc0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
   - 5fab4f81391d
   - 2b3e65a4252f
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -372,21 +372,21 @@ tools:
   owner: iuc
   revisions:
   - 37213cf56392
-  - 45083d070fb8
-  - ba6f87115e13
   - 809dfc93d593
-  - 200c378d85f3
   - 037a11682176
   - 2c68b0c38785
+  - 200c378d85f3
+  - ba6f87115e13
+  - 45083d070fb8
   - ac8250086ac3
   - e1a9d6fd258d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction