Jenkins install build 1649.

usegalaxy-au · Oct 8, 2024 · 09368d4 · 09368d4
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7884,3 +7884,5 @@ Update	212	02/10/24 18:00:28	use_theoretical_mz_annotations	False	Installed	rece
 Update	212	02/10/24 18:01:05	vcffilter	False	Installed	devteam	4bdc111b2470	4bdc111b2470				VCF/BCF	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_212/install_log.txt
 Update	212	02/10/24 18:01:43	vcfsort	False	Installed	devteam	ee60203e68d9	ee60203e68d9				VCF/BCF	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_212/install_log.txt
 Install	1645	03/10/24 15:00:53	kmc	True	Installed	galaxy-australia	87ddc8ca7859	87ddc8ca7859		11/11		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1645/install_log.txt
+Install	1649	08/10/24 12:32:57	ctb_im_conformers	True	Installed	bgruening	a4b1474efada	latest		1/1		ChemicalToolBox	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1649/install_log.txt
+Install	1649	08/10/24 13:04:04	gprofiler_gost	True	Tests failed	iuc	bf39cdd007f5	latest	Staging Testing	0/2		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1649/install_log.txt
diff --git a/requests/gtn_20241004.yml b/requests/gtn_20241004.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,18 +2,18 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - c2ef298da409
-  - 3f3e247c053d
+  - 6e9aea89e388
   - 78c75f134c16
+  - 3f3e247c053d
+  - c2ef298da409
   - 4efdca267d51
-  - 6e9aea89e388
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -33,30 +33,30 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - d6c074a93c51
   - 1b52f0c8ad7f
+  - d6c074a93c51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
   - 133f36c29579
-  - 4f2967b27e67
-  - 1aae04680c4b
+  - 3e1f6f6d557e
+  - a79ee60b6926
   - 44018dd6b447
   - cd2480f35935
   - f29602ae449e
-  - fe3ca740a485
-  - 3e1f6f6d557e
-  - a79ee60b6926
   - b5d8e5475247
+  - 4f2967b27e67
+  - fe3ca740a485
+  - 1aae04680c4b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - bc88856eddab
   - e78e25d3b4bd
+  - bc88856eddab
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
@@ -70,26 +70,26 @@ tools:
 - name: augustus
   owner: bgruening
   revisions:
-  - ca6d970d931c
   - 09855551d713
+  - ca6d970d931c
   - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - 92eee5f31117
   - 728dacaf08a9
-  - d77802fe76f7
   - da5f1924bb2e
+  - d77802fe76f7
+  - 92eee5f31117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
+  - 8fd427007e93
   - 7355bbf5e05f
   - fe48aa4ccd5e
-  - 8fd427007e93
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -115,16 +115,16 @@ tools:
   owner: bgruening
   revisions:
   - 8e9e228c54c4
-  - 1ac12c0cc7a0
   - 7ccc6234b54e
+  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
+  - 63662ae295d6
   - 9d1fbff733cf
   - d9c3016f7283
-  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -148,61 +148,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 14f588312c56
-  - 3bbe70fef6df
-  - 582fd74dc2a1
-  - 9c15ca7e764e
   - b6b5cd37f2a2
-  - 9f2455341fac
   - 756376aeb1ae
+  - 9f2455341fac
+  - 14f588312c56
+  - 9c15ca7e764e
+  - 582fd74dc2a1
+  - 3bbe70fef6df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - a230ea445788
   - 1691af4a0d17
+  - 8e1ace8f77c6
+  - 0ffe5be70caf
   - 73428a792541
-  - 989f7c061f35
   - 30fb23d4c31c
-  - 0ffe5be70caf
-  - a230ea445788
-  - 8e1ace8f77c6
+  - 989f7c061f35
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
+  - 5a5ae61da69c
+  - 494f0bb4a993
+  - 563a19373357
   - 0418d28136de
   - 30f08d74024f
-  - e94187d661df
-  - 494f0bb4a993
   - 57c6718cbfcc
-  - 5a5ae61da69c
-  - 563a19373357
+  - e94187d661df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
+  - 4b96ced19f75
   - 2bba2ff070d9
-  - 7abc5f6dd595
-  - 1bc5a03faf2e
-  - f77d7b685bb3
   - f31125bb85ea
   - d6c7106b7b2e
-  - 4b96ced19f75
+  - f77d7b685bb3
+  - 1bc5a03faf2e
+  - 7abc5f6dd595
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 52af33194019
+  - d3af38b9c7e1
   - b3cf4684e9c7
   - 520e30695ec3
-  - d3af38b9c7e1
   - 54961e026fe4
   - d77fdcca400e
   - fed64e676186
+  - 52af33194019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -215,8 +215,8 @@ tools:
   owner: iuc
   revisions:
   - 79261884facd
-  - 07d7991bf205
   - 2aea122fbd25
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -228,10 +228,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - ef2ad746b589
-  - 602de62d995b
   - 43798b4caee0
+  - 602de62d995b
   - 8b3e3657034e
+  - ef2ad746b589
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -255,16 +255,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
+  - c55643c3d813
   - 74810db257cc
   - 98cafcbd2578
-  - c55643c3d813
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -282,26 +282,26 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 3c1a01127868
+  - d46d803ca6cc
   - 370c210d9541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
   - 624606f7c996
+  - 033755194fe9
+  - e95d52d295d7
   - b815ec682418
   - c8ac28e8ac44
-  - e95d52d295d7
-  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -343,9 +343,9 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - a17498c603ec
   - d643e3b03500
   - bf68eb663bc3
-  - a17498c603ec
   - eaee459f3d69
   - 8a22554cdde2
   tool_panel_section_label: Annotation
@@ -366,8 +366,8 @@ tools:
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -391,22 +391,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 268d162b9c49
-  - 5b80f544c67f
-  - 5c7b70713fb5
-  - 6322be79bd8e
+  - 8f92c2b26e6d
   - 5a29ab10dba6
   - 68693743661e
+  - 6322be79bd8e
   - cfcf33df7fc0
-  - 8f92c2b26e6d
+  - 268d162b9c49
+  - 5b80f544c67f
+  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
-  - 2b3e65a4252f
   - 5fab4f81391d
+  - 2b3e65a4252f
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -418,8 +418,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -431,24 +431,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - e1a9d6fd258d
-  - ba6f87115e13
-  - 51dd22484644
-  - 45083d070fb8
-  - 200c378d85f3
+  - d03af1c7002c
   - 37213cf56392
+  - e1a9d6fd258d
+  - ac8250086ac3
   - 037a11682176
-  - d03af1c7002c
+  - 51dd22484644
+  - ba6f87115e13
   - 4839e590cb26
-  - ac8250086ac3
   - 809dfc93d593
+  - 45083d070fb8
+  - 200c378d85f3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm