Jenkins install build 1416 errors

usegalaxy-au · Feb 5, 2024 · 157eda5 · 157eda5
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diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: bamtools_split_mapped
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: bamtools_split_ref
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: humann_associate
+  owner: iuc
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: humann_join_tables
+  owner: iuc
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: humann_rna_dna_norm
+  owner: iuc
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: kraken_taxonomy_report
+  owner: iuc
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: krakentools_combine_kreports
+  owner: iuc
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: krakentools_kreport2mpa
+  owner: iuc
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: medaka_variant_pipeline
+  owner: iuc
+  tool_panel_section_label: Nanopore
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: qualimap_counts
+  owner: iuc
+  tool_panel_section_label: RNA-seq
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: raceid_filtnormconf
+  owner: iuc
+  tool_panel_section_label: Single-cell
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: samtools_ampliconclip
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: samtools_bam_to_cram
+  owner: iuc
+  tool_panel_section_label: Convert Formats
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: samtools_coverage
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: samtools_depth
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: samtools_fixmate
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: samtools_markdup
+  owner: iuc
+  tool_panel_section_label: SAM/BAM
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: scater_normalize
+  owner: iuc
+  tool_panel_section_label: Single-cell
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: scater_plot_exprs_freq
+  owner: iuc
+  tool_panel_section_label: Single-cell
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: scater_plot_tsne
+  owner: iuc
+  tool_panel_section_label: Single-cell
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: transit_tn5gaps
+  owner: iuc
+  tool_panel_section_label: Annotation
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: trinity_super_transcripts
+  owner: iuc
+  tool_panel_section_label: RNA-seq
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: ucsc_fatovcf
+  owner: iuc
+  tool_panel_section_label: Convert Formats
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: ucsc_wigtobigwig
+  owner: iuc
+  tool_panel_section_label: Convert Formats
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: umi_tools_group
+  owner: iuc
+  tool_panel_section_label: FASTA/FASTQ
diff --git a/requests/[email protected] b/requests/[email protected]
@@ -0,0 +1,4 @@
+tools:
+- name: umi_tools_whitelist
+  owner: iuc
+  tool_panel_section_label: FASTA/FASTQ
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: varscan_copynumber
+  owner: iuc
+  tool_panel_section_label: Variant Calling
diff --git a/requests/[email protected] b/requests/[email protected]
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+tools:
+- name: varscan_mpileup
+  owner: iuc
+  tool_panel_section_label: Variant Calling