Jenkins install build 1376.

usegalaxy-au · Dec 18, 2023 · 29db33d · 29db33d
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6108,3 +6108,4 @@ Update	176	14/12/23 12:52:35	sample_seqs	False	Tests failed	peterjc	bdaefd241921
 Update	176	14/12/23 12:59:55	samtools_split	False	Tests failed	devteam	bd850490c7f1	bd850490c7f1	Production Testing	1/1	0/1	SAM/BAM	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_176/install_log.txt
 Update	176	14/12/23 15:41:55	seqtk	False	Installed	iuc	4b494533146a	4b494533146a		33/33	0/0	FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_176/install_log.txt
 Install	1374	18/12/23 09:41:41	geneiobio	True	Installed	iuc	fc53fcdbe548	fc53fcdbe548		2/2	2/2	Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1374/install_log.txt
+Install	1376	18/12/23 11:47:34	windowmasker	True	Installed	iuc	d90ae4a02efd	d90ae4a02efd		11/11	11/11	Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1376/install_log.txt
diff --git a/requests/windowmasker.yml b/requests/windowmasker.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 4efdca267d51
   - c2ef298da409
+  - 4efdca267d51
+  - 3f3e247c053d
   - 6e9aea89e388
   - 78c75f134c16
-  - 3f3e247c053d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - fe3ca740a485
+  - 1aae04680c4b
   - 133f36c29579
+  - 3e1f6f6d557e
+  - fe3ca740a485
+  - 4f2967b27e67
   - 44018dd6b447
-  - 1aae04680c4b
-  - cd2480f35935
   - b5d8e5475247
   - f29602ae449e
-  - 4f2967b27e67
-  - 3e1f6f6d557e
+  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -57,17 +57,17 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
   - 7be22100e5e1
+  - dc027fa56d55
   - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - 28433faa6e42
   - 09855551d713
   - ca6d970d931c
+  - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -106,9 +106,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
-  - d9c3016f7283
   - 9d1fbff733cf
+  - d9c3016f7283
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,54 +126,54 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 756376aeb1ae
-  - 3bbe70fef6df
-  - 14f588312c56
-  - 582fd74dc2a1
   - b6b5cd37f2a2
   - 9f2455341fac
+  - 14f588312c56
+  - 3bbe70fef6df
+  - 756376aeb1ae
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - 73428a792541
   - 1691af4a0d17
+  - 30fb23d4c31c
   - 989f7c061f35
   - a230ea445788
   - 0ffe5be70caf
-  - 30fb23d4c31c
-  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 5a5ae61da69c
-  - 563a19373357
-  - 30f08d74024f
-  - e94187d661df
   - 494f0bb4a993
+  - e94187d661df
+  - 30f08d74024f
+  - 563a19373357
+  - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
   - d6c7106b7b2e
+  - f31125bb85ea
   - 7abc5f6dd595
   - 2bba2ff070d9
   - 1bc5a03faf2e
-  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - b3cf4684e9c7
   - d3af38b9c7e1
-  - 54961e026fe4
-  - 52af33194019
   - fed64e676186
+  - 52af33194019
   - 520e30695ec3
+  - b3cf4684e9c7
+  - 54961e026fe4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -186,8 +186,8 @@ tools:
   owner: iuc
   revisions:
   - 79261884facd
-  - 07d7991bf205
   - 2aea122fbd25
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -199,10 +199,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 8b3e3657034e
-  - ef2ad746b589
   - 43798b4caee0
   - 602de62d995b
+  - 8b3e3657034e
+  - ef2ad746b589
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -220,8 +220,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -254,16 +254,16 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 3c1a01127868
   - 370c210d9541
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -287,11 +287,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
-  - d643e3b03500
   - eaee459f3d69
   - 8a22554cdde2
   - a17498c603ec
+  - bf68eb663bc3
+  - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -303,15 +303,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -323,21 +323,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - cfcf33df7fc0
   - 268d162b9c49
-  - 5c7b70713fb5
-  - 5a29ab10dba6
   - 9473cd297a76
-  - cfcf33df7fc0
-  - 68693743661e
-  - 5b80f544c67f
   - 8f92c2b26e6d
+  - 5a29ab10dba6
+  - 5b80f544c67f
+  - 68693743661e
+  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
   - 09d6806c609e
+  - 2b3e65a4252f
   - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -350,8 +350,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -363,15 +363,15 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 037a11682176
-  - e1a9d6fd258d
-  - ac8250086ac3
+  - 37213cf56392
   - 45083d070fb8
   - ba6f87115e13
   - 200c378d85f3
-  - 37213cf56392
-  - 809dfc93d593
+  - 037a11682176
+  - e1a9d6fd258d
   - 2c68b0c38785
+  - 809dfc93d593
+  - ac8250086ac3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
@@ -387,3 +387,9 @@ tools:
   - 358f58401cd6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: windowmasker
+  owner: iuc
+  revisions:
+  - d90ae4a02efd
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu