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Jenkins update build 172.
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galaxy-au-tools-jenkins-bot committed Nov 16, 2023
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48 changes: 48 additions & 0 deletions automated_tool_installation_log.tsv
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Expand Up @@ -5933,3 +5933,51 @@ Update 171 08/11/23 23:25:19 sklearn_numeric_clustering False Installed bgruenin
Update 171 09/11/23 00:25:02 sklearn_searchcv False Installed bgruening 7626ea9c2e1b 7626ea9c2e1b 0/0 20/20 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_171/install_log.txt
Update 171 09/11/23 00:44:22 sklearn_svm_classifier False Installed bgruening 80852884053f 80852884053f 0/0 7/7 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_171/install_log.txt
Update 171 09/11/23 00:57:06 sklearn_to_categorical False Installed bgruening caeb57858702 caeb57858702 0/0 6/6 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_171/install_log.txt
Update 172 15/11/23 21:06:04 2d_auto_threshold False Installed imgteam 3df9f0a4bf34 3df9f0a4bf34 2/2 2/2 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 15/11/23 21:18:48 2d_feature_extraction False Installed imgteam 0a53256b48c6 0a53256b48c6 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 15/11/23 21:32:09 2d_filter_segmentation_by_features False Installed imgteam 6ad1d3cfdea1 6ad1d3cfdea1 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 15/11/23 21:48:45 2d_histogram_equalization False Installed imgteam 77f7159d775a 77f7159d775a 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 15/11/23 21:59:00 2d_simple_filter False Installed imgteam f70b215d155c f70b215d155c 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 02:55:33 anndata_import False Tests failed iuc 93dd15e13e6a 93dd15e13e6a Staging Testing 6/9 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 03:13:00 anndata_inspect False Tests failed iuc 6f0d0c784f09 6f0d0c784f09 Staging Testing 12/16 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 04:49:17 anndata_manipulate False Installed iuc ed4996a16f7f ed4996a16f7f 11/11 0/0 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 05:04:33 bfconvert False Installed imgteam 85edbb7a436b 85edbb7a436b 3/3 0/0 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 05:34:11 binary2labelimage False Installed imgteam 984358e43242 984358e43242 2/2 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 06:14:57 blockclust False Installed rnateam dbb6ee3179bc dbb6ee3179bc 4/4 4/4 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 06:59:12 busco False Tests failed iuc 2a5b8b9936bf 2a5b8b9936bf Staging Testing 7/8 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 07:03:27 cat_bins False Tests failed iuc 31853794ace2 31853794ace2 Staging Testing 0/4 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 07:14:23 chipseeker False Tests failed rnateam 8bd92f2404dd 8bd92f2404dd Staging Testing 4/6 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 07:25:19 count_objects False Installed imgteam b58447a2eed2 b58447a2eed2 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 07:35:53 cp_common False Installed bgruening 6070780813d9 6070780813d9 2/2 2/2 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 07:44:49 cp_convert_objects_to_image False Installed bgruening ef4aed1d34c4 ef4aed1d34c4 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 08:27:36 cp_image_math False Installed bgruening ff1a86a87364 ff1a86a87364 3/3 3/3 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 08:37:08 cp_overlay_outlines False Tests failed bgruening b44b081bcf37 b44b081bcf37 Production Testing 4/4 0/4 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 08:42:02 datamash_transpose False Installed iuc a513e3fbb4c5 a513e3fbb4c5 1/1 0/0 Join, Subtract and Group toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 08:44:02 encyclopedia_encyclopedia False Tests failed galaxyp eac99effe86f eac99effe86f Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 08:46:06 encyclopedia_walnut False Tests failed galaxyp 0d2e93e01e68 0d2e93e01e68 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 08:49:13 funannotate_annotate False Tests failed iuc 756376aeb1ae 756376aeb1ae Staging Testing 0/2 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 09:12:05 funannotate_clean False Installed iuc 989f7c061f35 989f7c061f35 2/2 2/2 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 09:15:40 funannotate_compare False Tests failed iuc e94187d661df e94187d661df Staging Testing 0/3 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 09:41:18 funannotate_sort False Installed iuc 520e30695ec3 520e30695ec3 2/2 2/2 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 10:25:29 hicexplorer_hicfindtads False Installed bgruening ec4b948dc6f0 ec4b948dc6f0 2/2 2/2 HiCExplorer toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 12:09:08 hicexplorer_hicpca False Tests failed bgruening 77919cc3618e 77919cc3618e Production Testing 5/5 0/5 HiCExplorer toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 14:14:06 hifiasm False Tests failed bgruening 0ee0c3089254 0ee0c3089254 Production Testing 15/15 14/15 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 14:24:33 humann False Tests failed iuc fc6c328c292f fc6c328c292f Staging Testing 3/8 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 14:29:09 humann_rename_table False Tests failed iuc 094ad9c068af 094ad9c068af Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 14:52:59 image_info False Installed imgteam 236ec78b2e53 236ec78b2e53 1/1 1/1 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 15:02:41 keras_model_builder False Installed bgruening 522137aaa9c4 522137aaa9c4 3/3 0/0 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 16:51:13 keras_model_config False Tests failed bgruening 4d81e3e2fb63 4d81e3e2fb63 Production Testing 5/5 2/5 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 17:04:02 merqury False Tests failed iuc 09c589057ee8 09c589057ee8 Staging Testing 3/6 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 17:15:16 metabat2 False Installed iuc eb50e7eca3dc eb50e7eca3dc 4/4 0/0 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 18:53:01 ml_visualization_ex False Tests failed bgruening 8334dc98c48e 8334dc98c48e Production Testing 8/8 0/8 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 18:55:07 openms_targetedfileconverter False Tests failed galaxyp 9c70a651a53e 9c70a651a53e Staging Testing 0/20 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 18:57:16 openms_xmlvalidator False Tests failed galaxyp f036e8cf1a55 f036e8cf1a55 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 20:27:11 scanpy_cluster_reduce_dimension False Errored iuc edec35114f72 edec35114f72 Production Installation 12/12 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 20:37:55 scanpy_filter False Tests failed iuc 2d02d9702d3a 2d02d9702d3a Staging Testing 7/8 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 22:06:00 scanpy_inspect False Tests failed iuc 6bd82ed14acd 6bd82ed14acd Production Testing 12/12 0/12 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 22:11:43 scanpy_normalize False Tests failed iuc c9cb76cf8d6c c9cb76cf8d6c Staging Testing 2/4 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 23:35:13 scanpy_plot False Tests failed iuc 95777145cb92 95777145cb92 Production Testing 34/34 4/34 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 16/11/23 23:43:51 scanpy_remove_confounders False Installed iuc 73ab2ac53d06 73ab2ac53d06 2/2 0/0 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 17/11/23 00:03:25 sklearn_build_pipeline False Installed bgruening 4c4ec859c31a 4c4ec859c31a 18/18 0/0 Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 17/11/23 02:10:27 sklearn_ensemble False Installed bgruening 060ca94ac049 060ca94ac049 12/12 12/12 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 17/11/23 02:55:35 sklearn_estimator_attributes False Installed bgruening 30d21a6041f6 30d21a6041f6 8/8 8/8 Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
81 changes: 40 additions & 41 deletions staging.gvl.org.au/annotation.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,11 @@ tools:
- name: abricate
owner: iuc
revisions:
- 3f3e247c053d
- 78c75f134c16
- c2ef298da409
- 4efdca267d51
- 6e9aea89e388
- 3f3e247c053d
- c2ef298da409
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_canongff3
Expand Down Expand Up @@ -36,15 +36,15 @@ tools:
- name: annotatemyids
owner: iuc
revisions:
- fe3ca740a485
- 1aae04680c4b
- 133f36c29579
- 44018dd6b447
- f29602ae449e
- 3e1f6f6d557e
- cd2480f35935
- 133f36c29579
- b5d8e5475247
- 44018dd6b447
- 4f2967b27e67
- cd2480f35935
- 1aae04680c4b
- f29602ae449e
- fe3ca740a485
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
Expand All @@ -57,17 +57,17 @@ tools:
- name: augustus_training
owner: bgruening
revisions:
- 6519ebe25019
- 7be22100e5e1
- dc027fa56d55
- 6519ebe25019
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
- 09855551d713
- ca6d970d931c
- 28433faa6e42
- 09855551d713
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
Expand All @@ -80,14 +80,13 @@ tools:
owner: iuc
revisions:
- fe48aa4ccd5e
- 8fd427007e93
- 7355bbf5e05f
- 8fd427007e93
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: chipseeker
owner: rnateam
revisions:
- 8bd92f2404dd
- 1b9a9409831d
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -100,9 +99,9 @@ tools:
- name: eggnog_mapper
owner: galaxyp
revisions:
- 63662ae295d6
- 9d1fbff733cf
- d9c3016f7283
- 63662ae295d6
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: exonerate
Expand All @@ -121,45 +120,45 @@ tools:
owner: iuc
revisions:
- b6b5cd37f2a2
- 582fd74dc2a1
- 9f2455341fac
- 582fd74dc2a1
- 14f588312c56
- 756376aeb1ae
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
- 989f7c061f35
- a230ea445788
- 73428a792541
- 30fb23d4c31c
- 0ffe5be70caf
- 30fb23d4c31c
- 73428a792541
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_compare
owner: iuc
revisions:
- 494f0bb4a993
- 5a5ae61da69c
- 563a19373357
- 30f08d74024f
- 5a5ae61da69c
- e94187d661df
- 494f0bb4a993
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
- 2bba2ff070d9
- f31125bb85ea
- 7abc5f6dd595
- 1bc5a03faf2e
- f31125bb85ea
- 2bba2ff070d9
- d6c7106b7b2e
- 7abc5f6dd595
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
owner: iuc
revisions:
- 52af33194019
- 520e30695ec3
- b3cf4684e9c7
- 54961e026fe4
- d3af38b9c7e1
Expand All @@ -174,8 +173,8 @@ tools:
- name: gff_to_prot
owner: iuc
revisions:
- 79261884facd
- 2aea122fbd25
- 79261884facd
- 07d7991bf205
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -188,8 +187,8 @@ tools:
- name: goseq
owner: iuc
revisions:
- ef2ad746b589
- 8b3e3657034e
- ef2ad746b589
- 43798b4caee0
- 602de62d995b
tool_panel_section_label: Annotation
Expand All @@ -216,8 +215,8 @@ tools:
- name: interproscan
owner: bgruening
revisions:
- 74810db257cc
- c55643c3d813
- 74810db257cc
- 98cafcbd2578
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -243,16 +242,16 @@ tools:
- name: maker
owner: iuc
revisions:
- d46d803ca6cc
- 3c1a01127868
- 370c210d9541
- d46d803ca6cc
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
- 033755194fe9
- 624606f7c996
- 033755194fe9
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand All @@ -276,11 +275,11 @@ tools:
- name: prokka
owner: crs4
revisions:
- eaee459f3d69
- bf68eb663bc3
- d643e3b03500
- eaee459f3d69
- a17498c603ec
- 8a22554cdde2
- d643e3b03500
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: red
Expand All @@ -292,15 +291,15 @@ tools:
- name: repeat_masker
owner: bgruening
revisions:
- ba6d2c32f797
- 3f987772e283
- ba6d2c32f797
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: repeatmodeler
owner: csbl
revisions:
- 41bfbaf3c959
- 8661b2607b7e
- 41bfbaf3c959
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snap_training
Expand All @@ -313,19 +312,19 @@ tools:
owner: iuc
revisions:
- 5a29ab10dba6
- 268d162b9c49
- 8f92c2b26e6d
- cfcf33df7fc0
- 68693743661e
- 5c7b70713fb5
- 8f92c2b26e6d
- 268d162b9c49
- cfcf33df7fc0
- 5b80f544c67f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
- 5fab4f81391d
- 09d6806c609e
- 5fab4f81391d
- 2b3e65a4252f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -338,8 +337,8 @@ tools:
- name: sortmerna
owner: rnateam
revisions:
- eb35257d2e29
- 10b84b577117
- eb35257d2e29
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: tbl2gff3
Expand All @@ -351,15 +350,15 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
- 809dfc93d593
- 037a11682176
- 200c378d85f3
- e1a9d6fd258d
- ba6f87115e13
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- 037a11682176
- ac8250086ac3
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
Expand Down
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