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Jenkins update build 220.
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galaxy-au-tools-jenkins-bot committed Nov 20, 2024
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29 changes: 29 additions & 0 deletions automated_tool_installation_log.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -8110,3 +8110,32 @@ Update 219 13/11/24 04:02:33 trycycler_consensus False Installed iuc a7ed21de23f
Update 219 13/11/24 04:03:11 trycycler_partition False Installed iuc 7673a6c920b2 7673a6c920b2 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_219/install_log.txt
Update 219 13/11/24 04:03:52 trycycler_reconcile_msa False Installed iuc ed312479d9eb ed312479d9eb Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_219/install_log.txt
Update 219 13/11/24 04:04:36 trycycler_subsample False Installed iuc b9b0246a2be3 b9b0246a2be3 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_219/install_log.txt
Update 220 20/11/24 01:36:44 abyss False Tests failed iuc db9b10824c61 db9b10824c61 Staging Testing 0/3 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 01:42:53 bbtools_bbduk False Installed iuc d58c27d2c5a7 d58c27d2c5a7 3/3 BB Tools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 01:48:03 bbtools_bbmerge False Installed iuc 1bb2b5b52030 1bb2b5b52030 3/3 BB Tools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 01:53:08 bbtools_tadpole False Installed iuc ce13b4678f18 ce13b4678f18 3/3 BB Tools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 01:53:48 blobtoolkit False Installed bgruening 392811378515 392811378515 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 01:58:18 data_manager_build_kraken2_database False Installed iuc e9ee4d074d5d e9ee4d074d5d 0/0 None toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:12:29 fastp False Installed iuc a626e8c0e1ba a626e8c0e1ba 15/15 FASTA/FASTQ toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:22:08 infernal False Tests failed bgruening 1d74ed49cf41 1d74ed49cf41 Staging Testing 6/12 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:22:50 matchms_add_key False Installed recetox a5d41764722d a5d41764722d Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:23:32 matchms_convert False Installed recetox 9e83636da9d3 9e83636da9d3 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:24:15 matchms_filtering False Installed recetox 83c4b4359ac4 83c4b4359ac4 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:24:57 matchms_fingerprint_similarity False Installed recetox fd890f162ce6 fd890f162ce6 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:25:49 matchms_formatter False Installed recetox a5a5b147da70 a5a5b147da70 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:26:28 matchms_metadata_export False Installed recetox 8832425b1ff6 8832425b1ff6 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:27:11 matchms_metadata_match False Installed recetox 330b0dfae8da 330b0dfae8da Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:27:53 matchms_metadata_merge False Installed recetox 1fd950c5586a 1fd950c5586a Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:28:32 matchms_networking False Installed recetox f04b378325e5 f04b378325e5 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:29:15 matchms_remove_key False Installed recetox fbdb2ae524df fbdb2ae524df Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:29:55 matchms_remove_spectra False Installed recetox d50ce2f51fc0 d50ce2f51fc0 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:30:35 matchms_spectral_similarity False Installed recetox 7ba589b01dbc 7ba589b01dbc Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:31:13 matchms_split False Installed recetox ea6c5636c0cf ea6c5636c0cf Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 02:31:57 matchms_subsetting False Installed recetox 5bbd1a8404f5 5bbd1a8404f5 Metabolomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 03:02:46 polypolish False Installed iuc 915637bd1d1a 915637bd1d1a 13/13 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 03:03:25 pretext_map False Installed iuc c6cec5ab35c1 c6cec5ab35c1 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 03:04:04 pretext_snapshot False Installed iuc 26f2fe7e53a1 26f2fe7e53a1 Graph/Display Data toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 03:19:15 quast False Tests failed iuc a3b35edea53a a3b35edea53a Staging Testing 11/13 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 03:45:35 sniffles False Installed iuc ceff2f6a5368 ceff2f6a5368 6/6 Variant Calling toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 03:46:17 snpeff False Installed iuc c7275bd8b4d6 c7275bd8b4d6 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
Update 220 20/11/24 04:20:43 tbprofiler False Installed iuc 8cb134b8c1a5 8cb134b8c1a5 4/4 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
124 changes: 63 additions & 61 deletions staging.gvl.org.au/annotation.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,11 @@ tools:
- name: abricate
owner: iuc
revisions:
- 6e9aea89e388
- 3f3e247c053d
- 78c75f134c16
- 4efdca267d51
- 6e9aea89e388
- c2ef298da409
- 4efdca267d51
- 78c75f134c16
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_canongff3
Expand All @@ -19,37 +19,37 @@ tools:
- name: aegean_gaeval
owner: iuc
revisions:
- 8dc7512c9dc9
- 1dd7adc21b6d
- 8dc7512c9dc9
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_locuspocus
owner: iuc
revisions:
- c4ac24510b55
- 1fdc517743e6
- c4ac24510b55
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_parseval
owner: iuc
revisions:
- d6c074a93c51
- 1b52f0c8ad7f
- d6c074a93c51
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: annotatemyids
owner: iuc
revisions:
- 4f2967b27e67
- 133f36c29579
- fe3ca740a485
- b5d8e5475247
- 1aae04680c4b
- 44018dd6b447
- 3e1f6f6d557e
- 44018dd6b447
- cd2480f35935
- f29602ae449e
- a79ee60b6926
- 4f2967b27e67
- f29602ae449e
- 1aae04680c4b
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
Expand All @@ -62,36 +62,36 @@ tools:
- name: augustus_training
owner: bgruening
revisions:
- 6519ebe25019
- 7be22100e5e1
- dc027fa56d55
- 6519ebe25019
- f1e653756174
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
- 09855551d713
- bd0e53f3a891
- ca6d970d931c
- 09855551d713
- 28433faa6e42
- ca6d970d931c
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
owner: iuc
revisions:
- da5f1924bb2e
- d77802fe76f7
- da5f1924bb2e
- 728dacaf08a9
- 92eee5f31117
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: barrnap
owner: iuc
revisions:
- 8fd427007e93
- 7355bbf5e05f
- fe48aa4ccd5e
- 8fd427007e93
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: braker3
Expand All @@ -103,8 +103,8 @@ tools:
- name: chipseeker
owner: rnateam
revisions:
- 8bd92f2404dd
- 1b9a9409831d
- 8bd92f2404dd
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: compleasm
Expand All @@ -116,9 +116,9 @@ tools:
- name: cpat
owner: bgruening
revisions:
- 8e9e228c54c4
- 7ccc6234b54e
- 1ac12c0cc7a0
- 8e9e228c54c4
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: eggnog_mapper
Expand Down Expand Up @@ -156,60 +156,60 @@ tools:
- name: funannotate_annotate
owner: iuc
revisions:
- 3bbe70fef6df
- 582fd74dc2a1
- 9f2455341fac
- 9c15ca7e764e
- b6b5cd37f2a2
- 14f588312c56
- 756376aeb1ae
- b6b5cd37f2a2
- 9f2455341fac
- 9c15ca7e764e
- 3bbe70fef6df
- 582fd74dc2a1
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
- 30fb23d4c31c
- a230ea445788
- 0ffe5be70caf
- 1691af4a0d17
- 73428a792541
- 8e1ace8f77c6
- 989f7c061f35
- 1691af4a0d17
- 0ffe5be70caf
- 8e1ace8f77c6
- 30fb23d4c31c
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_compare
owner: iuc
revisions:
- 563a19373357
- 494f0bb4a993
- 5a5ae61da69c
- 0418d28136de
- 5a5ae61da69c
- 30f08d74024f
- 494f0bb4a993
- 563a19373357
- e94187d661df
- 57c6718cbfcc
- 30f08d74024f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
- 1bc5a03faf2e
- f77d7b685bb3
- d6c7106b7b2e
- 4b96ced19f75
- f77d7b685bb3
- f31125bb85ea
- 2bba2ff070d9
- 4b96ced19f75
- 1bc5a03faf2e
- 7abc5f6dd595
- f31125bb85ea
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
owner: iuc
revisions:
- 54961e026fe4
- fed64e676186
- d77fdcca400e
- 54961e026fe4
- b3cf4684e9c7
- 52af33194019
- d3af38b9c7e1
- d77fdcca400e
- 52af33194019
- 520e30695ec3
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -222,9 +222,9 @@ tools:
- name: gff_to_prot
owner: iuc
revisions:
- 07d7991bf205
- 79261884facd
- 2aea122fbd25
- 79261884facd
- 07d7991bf205
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goenrichment
Expand All @@ -236,10 +236,10 @@ tools:
- name: goseq
owner: iuc
revisions:
- ef2ad746b589
- 8b3e3657034e
- 43798b4caee0
- 602de62d995b
- 43798b4caee0
- 8b3e3657034e
- ef2ad746b589
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goslimmer
Expand All @@ -263,16 +263,16 @@ tools:
- name: infernal
owner: bgruening
revisions:
- c9e29ac5d099
- 477d829d3250
- c9e29ac5d099
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: interproscan
owner: bgruening
revisions:
- 74810db257cc
- c55643c3d813
- 98cafcbd2578
- 74810db257cc
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: jcvi_gff_stats
Expand All @@ -297,19 +297,19 @@ tools:
- name: maker
owner: iuc
revisions:
- d46d803ca6cc
- 370c210d9541
- d46d803ca6cc
- 3c1a01127868
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
- c8ac28e8ac44
- 624606f7c996
- 033755194fe9
- b815ec682418
- c8ac28e8ac44
- e95d52d295d7
- 624606f7c996
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand Down Expand Up @@ -351,11 +351,11 @@ tools:
- name: prokka
owner: crs4
revisions:
- a17498c603ec
- 8a22554cdde2
- eaee459f3d69
- d643e3b03500
- bf68eb663bc3
- a17498c603ec
- d643e3b03500
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: red
Expand All @@ -374,8 +374,8 @@ tools:
- name: repeatmodeler
owner: csbl
revisions:
- 41bfbaf3c959
- 8661b2607b7e
- 41bfbaf3c959
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: sanntis_marine
Expand All @@ -399,22 +399,23 @@ tools:
- name: snpeff
owner: iuc
revisions:
- 5c7b70713fb5
- 8f92c2b26e6d
- ca2b512e8d7c
- c7275bd8b4d6
- 268d162b9c49
- 68693743661e
- cfcf33df7fc0
- 6322be79bd8e
- 8f92c2b26e6d
- 68693743661e
- ca2b512e8d7c
- 5a29ab10dba6
- 5b80f544c67f
- 5c7b70713fb5
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
- 5fab4f81391d
- 2b3e65a4252f
- 5fab4f81391d
- 09d6806c609e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -427,8 +428,8 @@ tools:
- name: sortmerna
owner: rnateam
revisions:
- eb35257d2e29
- 10b84b577117
- eb35257d2e29
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: tbl2gff3
Expand All @@ -440,24 +441,25 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
- 45083d070fb8
- 51dd22484644
- 45083d070fb8
- 37213cf56392
- 037a11682176
- ac8250086ac3
- e1a9d6fd258d
- d03af1c7002c
- 8cb134b8c1a5
- 037a11682176
- 809dfc93d593
- e1a9d6fd258d
- 200c378d85f3
- ac8250086ac3
- 4839e590cb26
- ba6f87115e13
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
owner: iuc
revisions:
- 8fc50fe60127
- f50807720df1
- 8fc50fe60127
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_hmm
Expand Down
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