Jenkins install build 1714.

usegalaxy-au · Dec 20, 2024 · 458395c · 458395c
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -8245,3 +8245,4 @@ Update	224	18/12/24 03:13:12	krakentools_alpha_diversity	False	Tests failed	iuc
 Update	224	18/12/24 03:26:51	quast	False	Tests failed	iuc	a3b35edea53a	a3b35edea53a	Staging Testing	11/13		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_224/install_log.txt
 Update	224	18/12/24 03:39:45	uniprotxml_downloader	False	Installed	galaxyp	4ddc8da62671	4ddc8da62671		9/9		Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_224/install_log.txt
 Update	224	18/12/24 03:40:28	volcanoplot	False	Installed	iuc	99ace6c1ff57	99ace6c1ff57				Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_224/install_log.txt
+Install	1714	20/12/24 00:07:24	ncbi_fcs_gx	True	Tests failed	iuc	32d058f3462a	32d058f3462a	Staging Testing	1/2		FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1714/install_log.txt
diff --git a/requests/ncbi_fcs_gx.yml b/requests/ncbi_fcs_gx.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,25 +2,25 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 6e9aea89e388
-  - 3f3e247c053d
-  - 4efdca267d51
   - 78c75f134c16
   - c2ef298da409
+  - 3f3e247c053d
+  - 6e9aea89e388
+  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 8dc7512c9dc9
   - 1dd7adc21b6d
+  - 8dc7512c9dc9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
@@ -40,16 +40,16 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 44018dd6b447
   - fe3ca740a485
-  - a79ee60b6926
+  - 1aae04680c4b
   - 133f36c29579
-  - cd2480f35935
+  - 44018dd6b447
   - f29602ae449e
+  - 3e1f6f6d557e
+  - cd2480f35935
   - 4f2967b27e67
-  - 1aae04680c4b
+  - a79ee60b6926
   - b5d8e5475247
-  - 3e1f6f6d557e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,38 +62,38 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 7be22100e5e1
-  - 6519ebe25019
   - dc027fa56d55
   - aada0deea587
+  - 7be22100e5e1
   - f1e653756174
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
+  - bd0e53f3a891
+  - ca6d970d931c
   - 28433faa6e42
   - 0fc0f9cf035a
-  - bd0e53f3a891
   - 09855551d713
-  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
   - 92eee5f31117
+  - da5f1924bb2e
   - d77802fe76f7
   - 728dacaf08a9
-  - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - 7355bbf5e05f
   - 8fd427007e93
   - fe48aa4ccd5e
+  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -126,9 +126,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
+  - 9d1fbff733cf
   - d9c3016f7283
   - 63662ae295d6
-  - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -158,61 +158,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - b6b5cd37f2a2
+  - 9c15ca7e764e
   - 582fd74dc2a1
+  - 9f2455341fac
+  - b6b5cd37f2a2
   - 756376aeb1ae
-  - 9c15ca7e764e
-  - 14f588312c56
   - 3bbe70fef6df
-  - 9f2455341fac
+  - 14f588312c56
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - 1691af4a0d17
-  - a230ea445788
+  - 73428a792541
   - 8e1ace8f77c6
   - 989f7c061f35
+  - a230ea445788
   - 0ffe5be70caf
-  - 73428a792541
   - 30fb23d4c31c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 0418d28136de
-  - 30f08d74024f
+  - 494f0bb4a993
   - 563a19373357
-  - e94187d661df
   - 5a5ae61da69c
   - 57c6718cbfcc
-  - 494f0bb4a993
+  - e94187d661df
+  - 0418d28136de
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 2bba2ff070d9
-  - f31125bb85ea
-  - 1bc5a03faf2e
-  - 7abc5f6dd595
-  - d6c7106b7b2e
   - 4b96ced19f75
   - f77d7b685bb3
+  - d6c7106b7b2e
+  - f31125bb85ea
+  - 7abc5f6dd595
+  - 1bc5a03faf2e
+  - 2bba2ff070d9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - d77fdcca400e
   - d3af38b9c7e1
-  - 52af33194019
   - 54961e026fe4
-  - d77fdcca400e
   - 520e30695ec3
-  - b3cf4684e9c7
   - fed64e676186
+  - b3cf4684e9c7
+  - 52af33194019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -225,8 +225,8 @@ tools:
   owner: iuc
   revisions:
   - 07d7991bf205
-  - 79261884facd
   - 2aea122fbd25
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -238,10 +238,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - ef2ad746b589
   - 602de62d995b
   - 8b3e3657034e
   - 43798b4caee0
+  - ef2ad746b589
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -265,16 +265,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
   - c55643c3d813
-  - 98cafcbd2578
   - 74810db257cc
+  - 98cafcbd2578
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -292,8 +292,8 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
@@ -307,11 +307,11 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - c8ac28e8ac44
+  - 033755194fe9
   - b815ec682418
-  - 624606f7c996
+  - c8ac28e8ac44
   - e95d52d295d7
-  - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -353,10 +353,10 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
-  - d643e3b03500
   - a17498c603ec
   - eaee459f3d69
+  - d643e3b03500
+  - bf68eb663bc3
   - 8a22554cdde2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -401,23 +401,23 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 8f92c2b26e6d
   - 6322be79bd8e
+  - c7275bd8b4d6
+  - 5b80f544c67f
   - cfcf33df7fc0
-  - 8f92c2b26e6d
   - 268d162b9c49
   - 5a29ab10dba6
-  - c7275bd8b4d6
-  - 68693743661e
-  - 5b80f544c67f
   - 5c7b70713fb5
+  - 68693743661e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 5fab4f81391d
-  - 2b3e65a4252f
   - 09d6806c609e
+  - 2b3e65a4252f
+  - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -442,18 +442,18 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 037a11682176
-  - 200c378d85f3
+  - d03af1c7002c
+  - 37213cf56392
+  - 45083d070fb8
+  - ba6f87115e13
   - e1a9d6fd258d
+  - 51dd22484644
+  - ac8250086ac3
+  - 037a11682176
+  - 8cb134b8c1a5
   - 809dfc93d593
-  - ba6f87115e13
+  - 200c378d85f3
   - 4839e590cb26
-  - d03af1c7002c
-  - 8cb134b8c1a5
-  - ac8250086ac3
-  - 51dd22484644
-  - 45083d070fb8
-  - 37213cf56392
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel