Jenkins install build 1401.

usegalaxy-au · Jan 16, 2024 · 524a4a4 · 524a4a4
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6141,3 +6141,4 @@ Install	1390	15/01/24 13:09:19	data_manager_pharokka	True	Shed-tools error	iuc	5
 Install	1392	15/01/24 13:12:47	data_manager_pharokka	True	Already Installed	iuc	50caca83e7c9	50caca83e7c9	Production Installation			None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1392/install_log.txt
 Install	1394	16/01/24 08:57:21	orthofinder_onlygroups	True	Tests failed	iuc	b3d25fae5389	latest	Production Testing	0/0	2/9	Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1394/install_log.txt
 Install	1396	16/01/24 09:38:04	orthofinder_onlygroups	False	Already Installed	iuc	b3d25fae5389	latest	Production Installation	9/9		Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1396/install_log.txt
+Install	1401	16/01/24 13:01:05	pharokka	True	Installed	iuc	2f40d2ccb0eb	latest				Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1401/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - c2ef298da409
-  - 4efdca267d51
-  - 6e9aea89e388
   - 3f3e247c053d
   - 78c75f134c16
+  - 4efdca267d51
+  - 6e9aea89e388
+  - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - fe3ca740a485
-  - 4f2967b27e67
-  - cd2480f35935
-  - f29602ae449e
+  - 133f36c29579
   - b5d8e5475247
-  - 1aae04680c4b
   - 44018dd6b447
+  - 4f2967b27e67
+  - fe3ca740a485
   - 3e1f6f6d557e
-  - 133f36c29579
+  - 1aae04680c4b
+  - f29602ae449e
+  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -58,8 +58,8 @@ tools:
   owner: bgruening
   revisions:
   - dc027fa56d55
-  - 7be22100e5e1
   - 6519ebe25019
+  - 7be22100e5e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
@@ -106,9 +106,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 9d1fbff733cf
-  - d9c3016f7283
   - 63662ae295d6
+  - d9c3016f7283
+  - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,56 +126,56 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
-  - 756376aeb1ae
-  - 9f2455341fac
-  - 582fd74dc2a1
   - 14f588312c56
+  - 582fd74dc2a1
+  - 3bbe70fef6df
   - b6b5cd37f2a2
+  - 9f2455341fac
+  - 756376aeb1ae
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 989f7c061f35
+  - 30fb23d4c31c
+  - 73428a792541
   - a230ea445788
   - 1691af4a0d17
-  - 73428a792541
   - 0ffe5be70caf
-  - 30fb23d4c31c
+  - 989f7c061f35
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 563a19373357
-  - 494f0bb4a993
   - 5a5ae61da69c
+  - 494f0bb4a993
+  - 563a19373357
   - b69c46064ec7
-  - 30f08d74024f
   - e94187d661df
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
   - f77d7b685bb3
-  - 1bc5a03faf2e
-  - 2bba2ff070d9
   - 7abc5f6dd595
-  - d6c7106b7b2e
   - f31125bb85ea
+  - 2bba2ff070d9
+  - d6c7106b7b2e
+  - 1bc5a03faf2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - fed64e676186
   - d3af38b9c7e1
+  - fed64e676186
+  - 520e30695ec3
+  - 52af33194019
   - 54961e026fe4
   - b3cf4684e9c7
-  - 52af33194019
-  - 520e30695ec3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -188,8 +188,8 @@ tools:
   owner: iuc
   revisions:
   - 2aea122fbd25
-  - 07d7991bf205
   - 79261884facd
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -201,10 +201,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 43798b4caee0
   - ef2ad746b589
-  - 8b3e3657034e
+  - 43798b4caee0
   - 602de62d995b
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -228,8 +228,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -262,16 +262,16 @@ tools:
 - name: maker
   owner: iuc
   revisions:
+  - d46d803ca6cc
   - 3c1a01127868
   - 370c210d9541
-  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -292,14 +292,20 @@ tools:
   - 15cff34c2005
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: pharokka
+  owner: iuc
+  revisions:
+  - 2f40d2ccb0eb
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: prokka
   owner: crs4
   revisions:
+  - 8a22554cdde2
   - bf68eb663bc3
+  - d643e3b03500
   - eaee459f3d69
   - a17498c603ec
-  - 8a22554cdde2
-  - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -311,8 +317,8 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
@@ -332,21 +338,21 @@ tools:
   owner: iuc
   revisions:
   - 5c7b70713fb5
-  - 5b80f544c67f
-  - 9473cd297a76
-  - 8f92c2b26e6d
   - 68693743661e
-  - 5a29ab10dba6
   - 268d162b9c49
   - cfcf33df7fc0
+  - 5a29ab10dba6
+  - 9473cd297a76
+  - 8f92c2b26e6d
+  - 5b80f544c67f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
   - 5fab4f81391d
   - 09d6806c609e
+  - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -371,15 +377,15 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 809dfc93d593
+  - 45083d070fb8
+  - ba6f87115e13
   - 2c68b0c38785
+  - ac8250086ac3
   - 037a11682176
-  - 37213cf56392
-  - 45083d070fb8
+  - 809dfc93d593
   - e1a9d6fd258d
-  - ac8250086ac3
-  - ba6f87115e13
   - 200c378d85f3
+  - 37213cf56392
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel