Jenkins install build 1406.

usegalaxy-au · Jan 18, 2024 · 61a1e1e · 61a1e1e
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6156,3 +6156,4 @@ Update	178	17/01/24 13:23:00	sample_seqs	False	Tests failed	peterjc	bdaefd241921
 Update	178	17/01/24 13:26:05	samtools_split	False	Tests failed	devteam	bd850490c7f1	bd850490c7f1	Staging Testing	0/1		SAM/BAM	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_178/install_log.txt
 Update	178	17/01/24 13:27:08	smudgeplot	False	Installed	galaxy-australia	015283de3004	015283de3004				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_178/install_log.txt
 Install	1404	18/01/24 12:34:09	amrfinderplus_data_manager_build	True	Installed	iuc	592ef3959907	592ef3959907		0/0	0/0	None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1404/install_log.txt
+Install	1406	19/01/24 06:39:28	bakta	False	Installed	iuc	728dacaf08a9	latest				Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1406/install_log.txt
diff --git a/requests/bakta_latest.yml b/requests/bakta_latest.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 6e9aea89e388
-  - 4efdca267d51
   - 78c75f134c16
+  - 6e9aea89e388
   - c2ef298da409
   - 3f3e247c053d
+  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,22 +36,22 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - f29602ae449e
-  - 4f2967b27e67
   - b5d8e5475247
-  - 44018dd6b447
-  - 1aae04680c4b
+  - 4f2967b27e67
   - fe3ca740a485
   - 3e1f6f6d557e
+  - f29602ae449e
+  - 1aae04680c4b
   - 133f36c29579
+  - 44018dd6b447
   - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
@@ -66,8 +66,8 @@ tools:
   owner: bgruening
   revisions:
   - 09855551d713
-  - 28433faa6e42
   - ca6d970d931c
+  - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -107,9 +107,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 9d1fbff733cf
   - 63662ae295d6
   - d9c3016f7283
+  - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -127,55 +127,55 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - b6b5cd37f2a2
   - 3bbe70fef6df
+  - 756376aeb1ae
   - 582fd74dc2a1
   - 14f588312c56
   - 9f2455341fac
-  - b6b5cd37f2a2
-  - 756376aeb1ae
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 30fb23d4c31c
-  - 0ffe5be70caf
   - 989f7c061f35
-  - 73428a792541
   - 1691af4a0d17
+  - 0ffe5be70caf
+  - 73428a792541
   - a230ea445788
+  - 30fb23d4c31c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - e94187d661df
-  - b69c46064ec7
   - 30f08d74024f
   - 494f0bb4a993
-  - 563a19373357
+  - e94187d661df
   - 5a5ae61da69c
+  - b69c46064ec7
+  - 563a19373357
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f77d7b685bb3
-  - 7abc5f6dd595
+  - 1bc5a03faf2e
   - f31125bb85ea
   - d6c7106b7b2e
+  - 7abc5f6dd595
   - 2bba2ff070d9
-  - 1bc5a03faf2e
+  - f77d7b685bb3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - b3cf4684e9c7
   - 52af33194019
-  - 54961e026fe4
+  - b3cf4684e9c7
   - d3af38b9c7e1
   - 520e30695ec3
+  - 54961e026fe4
   - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -188,8 +188,8 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 07d7991bf205
   - 2aea122fbd25
+  - 07d7991bf205
   - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -202,10 +202,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - ef2ad746b589
-  - 8b3e3657034e
-  - 43798b4caee0
   - 602de62d995b
+  - 43798b4caee0
+  - 8b3e3657034e
+  - ef2ad746b589
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -236,9 +236,9 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
+  - c55643c3d813
   - 98cafcbd2578
   - 74810db257cc
-  - c55643c3d813
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -256,16 +256,16 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 370c210d9541
-  - 3c1a01127868
   - d46d803ca6cc
+  - 3c1a01127868
+  - 370c210d9541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
@@ -304,9 +304,9 @@ tools:
   revisions:
   - bf68eb663bc3
   - a17498c603ec
-  - d643e3b03500
   - 8a22554cdde2
   - eaee459f3d69
+  - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -318,15 +318,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -338,22 +338,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 268d162b9c49
-  - 5a29ab10dba6
-  - 68693743661e
+  - 5b80f544c67f
   - cfcf33df7fc0
-  - 8f92c2b26e6d
   - 9473cd297a76
+  - 68693743661e
+  - 268d162b9c49
   - 5c7b70713fb5
-  - 5b80f544c67f
+  - 8f92c2b26e6d
+  - 5a29ab10dba6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
-  - 5fab4f81391d
   - 09d6806c609e
+  - 5fab4f81391d
+  - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -379,21 +379,21 @@ tools:
   owner: iuc
   revisions:
   - ac8250086ac3
-  - e1a9d6fd258d
-  - 45083d070fb8
-  - 2c68b0c38785
   - 200c378d85f3
-  - 809dfc93d593
   - 37213cf56392
-  - ba6f87115e13
   - 037a11682176
+  - ba6f87115e13
+  - 45083d070fb8
+  - e1a9d6fd258d
+  - 2c68b0c38785
+  - 809dfc93d593
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction