Jenkins install build 1378.

usegalaxy-au · Dec 20, 2023 · 7d95ec8 · 7d95ec8
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6109,3 +6109,4 @@ Update	176	14/12/23 12:59:55	samtools_split	False	Tests failed	devteam	bd850490c
 Update	176	14/12/23 15:41:55	seqtk	False	Installed	iuc	4b494533146a	4b494533146a		33/33	0/0	FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_176/install_log.txt
 Install	1374	18/12/23 09:41:41	geneiobio	True	Installed	iuc	fc53fcdbe548	fc53fcdbe548		2/2	2/2	Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1374/install_log.txt
 Install	1376	18/12/23 11:47:34	windowmasker	True	Installed	iuc	d90ae4a02efd	d90ae4a02efd		11/11	11/11	Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1376/install_log.txt
+Install	1378	20/12/23 11:41:32	tetoolkit_tetranscripts	True	Tests failed	iuc	8e96d712a2bd	8e96d712a2bd	Production Testing	3/3	0/3	RNA-seq	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1378/install_log.txt
diff --git a/requests/tetoolkit_tetranscripts.yml b/requests/tetoolkit_tetranscripts.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -3,10 +3,10 @@ tools:
   owner: iuc
   revisions:
   - c2ef298da409
-  - 4efdca267d51
-  - 3f3e247c053d
   - 6e9aea89e388
   - 78c75f134c16
+  - 3f3e247c053d
+  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,30 +36,30 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 1aae04680c4b
-  - 133f36c29579
-  - 3e1f6f6d557e
   - fe3ca740a485
-  - 4f2967b27e67
   - 44018dd6b447
-  - b5d8e5475247
+  - 4f2967b27e67
+  - 1aae04680c4b
   - f29602ae449e
+  - 3e1f6f6d557e
   - cd2480f35935
+  - b5d8e5475247
+  - 133f36c29579
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - bc88856eddab
   - e78e25d3b4bd
+  - bc88856eddab
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
   - 7be22100e5e1
-  - dc027fa56d55
   - 6519ebe25019
+  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
@@ -80,8 +80,8 @@ tools:
   owner: iuc
   revisions:
   - 7355bbf5e05f
-  - fe48aa4ccd5e
   - 8fd427007e93
+  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -106,9 +106,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 9d1fbff733cf
   - d9c3016f7283
   - 63662ae295d6
+  - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,54 +126,54 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - b6b5cd37f2a2
   - 9f2455341fac
-  - 14f588312c56
+  - 582fd74dc2a1
   - 3bbe70fef6df
+  - 14f588312c56
+  - b6b5cd37f2a2
   - 756376aeb1ae
-  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - 989f7c061f35
   - 73428a792541
-  - 1691af4a0d17
   - 30fb23d4c31c
-  - 989f7c061f35
-  - a230ea445788
   - 0ffe5be70caf
+  - a230ea445788
+  - 1691af4a0d17
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 494f0bb4a993
-  - e94187d661df
   - 30f08d74024f
-  - 563a19373357
+  - e94187d661df
   - 5a5ae61da69c
+  - 494f0bb4a993
+  - 563a19373357
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
   - d6c7106b7b2e
-  - f31125bb85ea
-  - 7abc5f6dd595
   - 2bba2ff070d9
   - 1bc5a03faf2e
+  - f31125bb85ea
+  - 7abc5f6dd595
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - d3af38b9c7e1
+  - 520e30695ec3
   - fed64e676186
+  - 54961e026fe4
   - 52af33194019
-  - 520e30695ec3
   - b3cf4684e9c7
-  - 54961e026fe4
+  - d3af38b9c7e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -186,8 +186,8 @@ tools:
   owner: iuc
   revisions:
   - 79261884facd
-  - 2aea122fbd25
   - 07d7991bf205
+  - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -199,10 +199,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 43798b4caee0
-  - 602de62d995b
   - 8b3e3657034e
+  - 43798b4caee0
   - ef2ad746b589
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -220,16 +220,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - c55643c3d813
   - 74810db257cc
   - 98cafcbd2578
+  - c55643c3d813
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -247,15 +247,15 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 3c1a01127868
   - 370c210d9541
+  - 3c1a01127868
   - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -288,9 +288,9 @@ tools:
   owner: crs4
   revisions:
   - eaee459f3d69
-  - 8a22554cdde2
-  - a17498c603ec
   - bf68eb663bc3
+  - a17498c603ec
+  - 8a22554cdde2
   - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -303,8 +303,8 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
@@ -323,22 +323,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - cfcf33df7fc0
-  - 268d162b9c49
-  - 9473cd297a76
   - 8f92c2b26e6d
   - 5a29ab10dba6
-  - 5b80f544c67f
+  - cfcf33df7fc0
   - 68693743661e
+  - 9473cd297a76
+  - 268d162b9c49
+  - 5b80f544c67f
   - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
-  - 2b3e65a4252f
   - 5fab4f81391d
+  - 2b3e65a4252f
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -363,15 +363,15 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 37213cf56392
-  - 45083d070fb8
-  - ba6f87115e13
-  - 200c378d85f3
   - 037a11682176
+  - 45083d070fb8
   - e1a9d6fd258d
-  - 2c68b0c38785
   - 809dfc93d593
   - ac8250086ac3
+  - ba6f87115e13
+  - 37213cf56392
+  - 2c68b0c38785
+  - 200c378d85f3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel