Jenkins install build 1680.

usegalaxy-au · Oct 16, 2024 · 85ad8ff · 85ad8ff
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7945,3 +7945,10 @@ Install	1671	15/10/24 02:20:57	plot_ragtag_paf	True	Shed-tools error	galaxy-aust
 Install	1673	15/10/24 02:33:30	plot_ragtag_paf	True	Tests failed	galaxy-australia	94e0834ae4ed	latest	Staging Testing	0/3		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1673/install_log.txt
 Install	1675	15/10/24 03:11:07	gprofiler_gost	True	Tests failed	iuc	bf39cdd007f5	latest	Staging Testing	0/2		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1675/install_log.txt
 Install	1677	16/10/24 00:02:20	plot_ragtag_paf	True	Installed	galaxy-australia	c1bed78b9ed5	latest		3/3		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1677/install_log.txt
+Install	1680	16/10/24 00:31:23	arriba	False	Installed	iuc	45c2ec061cf9	45c2ec061cf9				RNA-seq	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Install	1680	16/10/24 00:32:11	cutesv	False	Installed	iuc	23d7e75d850e	23d7e75d850e				Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Install	1680	16/10/24 00:32:56	fasta_compute_length	False	Installed	devteam	5cbde03c1103	5cbde03c1103				FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Install	1680	16/10/24 00:33:54	humann	False	Installed	iuc	c2803012bbb3	c2803012bbb3				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Install	1680	16/10/24 00:34:51	humann_regroup_table	False	Installed	iuc	8237a0f225db	8237a0f225db				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Install	1680	16/10/24 00:35:46	humann_rename_table	False	Installed	iuc	aabf8cfb8fef	aabf8cfb8fef				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
+Install	1680	16/10/24 00:52:32	recentrifuge	False	Installed	iuc	591175c0f051	591175c0f051				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1680/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -3,17 +3,17 @@ tools:
   owner: iuc
   revisions:
   - 3f3e247c053d
-  - 78c75f134c16
   - 4efdca267d51
-  - c2ef298da409
   - 6e9aea89e388
+  - c2ef298da409
+  - 78c75f134c16
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -33,23 +33,23 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - 1b52f0c8ad7f
   - d6c074a93c51
+  - 1b52f0c8ad7f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - a79ee60b6926
   - 3e1f6f6d557e
   - b5d8e5475247
-  - cd2480f35935
-  - 4f2967b27e67
   - 1aae04680c4b
-  - 133f36c29579
   - fe3ca740a485
-  - f29602ae449e
   - 44018dd6b447
+  - a79ee60b6926
+  - f29602ae449e
+  - cd2480f35935
+  - 133f36c29579
+  - 4f2967b27e67
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,28 +62,28 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
+  - dc027fa56d55
   - 6519ebe25019
   - f1e653756174
   - 7be22100e5e1
-  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - 28433faa6e42
-  - bd0e53f3a891
   - ca6d970d931c
+  - bd0e53f3a891
+  - 28433faa6e42
   - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
+  - d77802fe76f7
+  - 728dacaf08a9
   - 92eee5f31117
   - da5f1924bb2e
-  - 728dacaf08a9
-  - d77802fe76f7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
@@ -116,16 +116,16 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
-  - 1ac12c0cc7a0
-  - 7ccc6234b54e
   - 8e9e228c54c4
+  - 7ccc6234b54e
+  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 9d1fbff733cf
   - 63662ae295d6
+  - 9d1fbff733cf
   - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -150,61 +150,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
-  - 14f588312c56
-  - b6b5cd37f2a2
-  - 756376aeb1ae
-  - 582fd74dc2a1
   - 9c15ca7e764e
+  - b6b5cd37f2a2
   - 9f2455341fac
+  - 14f588312c56
+  - 3bbe70fef6df
+  - 582fd74dc2a1
+  - 756376aeb1ae
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - a230ea445788
   - 1691af4a0d17
-  - 0ffe5be70caf
+  - 989f7c061f35
+  - a230ea445788
   - 73428a792541
-  - 30fb23d4c31c
   - 8e1ace8f77c6
-  - 989f7c061f35
+  - 30fb23d4c31c
+  - 0ffe5be70caf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
+  - 30f08d74024f
+  - 5a5ae61da69c
+  - 494f0bb4a993
+  - e94187d661df
   - 0418d28136de
   - 57c6718cbfcc
-  - 30f08d74024f
   - 563a19373357
-  - e94187d661df
-  - 494f0bb4a993
-  - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
   - d6c7106b7b2e
-  - 1bc5a03faf2e
-  - 2bba2ff070d9
+  - f31125bb85ea
   - 7abc5f6dd595
   - f77d7b685bb3
+  - 1bc5a03faf2e
   - 4b96ced19f75
-  - f31125bb85ea
+  - 2bba2ff070d9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 520e30695ec3
-  - fed64e676186
+  - d77fdcca400e
   - 54961e026fe4
-  - d3af38b9c7e1
+  - fed64e676186
   - b3cf4684e9c7
+  - d3af38b9c7e1
+  - 520e30695ec3
   - 52af33194019
-  - d77fdcca400e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -217,8 +217,8 @@ tools:
   owner: iuc
   revisions:
   - 79261884facd
-  - 2aea122fbd25
   - 07d7991bf205
+  - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -231,9 +231,9 @@ tools:
   owner: iuc
   revisions:
   - 43798b4caee0
-  - 602de62d995b
   - ef2ad746b589
   - 8b3e3657034e
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -291,18 +291,18 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 370c210d9541
   - 3c1a01127868
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
+  - 624606f7c996
   - 033755194fe9
-  - b815ec682418
   - c8ac28e8ac44
-  - 624606f7c996
+  - b815ec682418
   - e95d52d295d7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -346,10 +346,10 @@ tools:
   owner: crs4
   revisions:
   - bf68eb663bc3
-  - 8a22554cdde2
   - a17498c603ec
-  - d643e3b03500
+  - 8a22554cdde2
   - eaee459f3d69
+  - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -361,8 +361,8 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
@@ -393,21 +393,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 68693743661e
   - cfcf33df7fc0
+  - 8f92c2b26e6d
   - 268d162b9c49
+  - 6322be79bd8e
   - 5b80f544c67f
-  - 8f92c2b26e6d
   - 5a29ab10dba6
-  - 6322be79bd8e
-  - 68693743661e
   - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 5fab4f81391d
   - 09d6806c609e
+  - 5fab4f81391d
   - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -420,8 +420,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -434,23 +434,23 @@ tools:
   owner: iuc
   revisions:
   - 037a11682176
-  - ac8250086ac3
-  - 37213cf56392
   - ba6f87115e13
-  - 809dfc93d593
+  - d03af1c7002c
+  - 37213cf56392
+  - 4839e590cb26
   - e1a9d6fd258d
   - 200c378d85f3
-  - 51dd22484644
   - 45083d070fb8
-  - d03af1c7002c
-  - 4839e590cb26
+  - ac8250086ac3
+  - 809dfc93d593
+  - 51dd22484644
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm