Jenkins install build 1396.

usegalaxy-au · Jan 15, 2024 · 87e2e89 · 87e2e89
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6140,3 +6140,4 @@ Install	1388	15/01/24 11:12:44	pharokka	True	Tests failed	iuc	2f40d2ccb0eb	lates
 Install	1390	15/01/24 13:09:19	data_manager_pharokka	True	Shed-tools error	iuc	50caca83e7c9	50caca83e7c9	Production Installation	0/0		None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1390/install_log.txt
 Install	1392	15/01/24 13:12:47	data_manager_pharokka	True	Already Installed	iuc	50caca83e7c9	50caca83e7c9	Production Installation			None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1392/install_log.txt
 Install	1394	16/01/24 08:57:21	orthofinder_onlygroups	True	Tests failed	iuc	b3d25fae5389	latest	Production Testing	0/0	2/9	Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1394/install_log.txt
+Install	1396	16/01/24 09:38:04	orthofinder_onlygroups	False	Already Installed	iuc	b3d25fae5389	latest	Production Installation	9/9		Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1396/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -3,10 +3,10 @@ tools:
   owner: iuc
   revisions:
   - 4efdca267d51
-  - 3f3e247c053d
+  - c2ef298da409
   - 78c75f134c16
+  - 3f3e247c053d
   - 6e9aea89e388
-  - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 133f36c29579
   - cd2480f35935
-  - f29602ae449e
-  - 1aae04680c4b
-  - b5d8e5475247
-  - 44018dd6b447
+  - 133f36c29579
   - fe3ca740a485
+  - 44018dd6b447
   - 4f2967b27e67
+  - 1aae04680c4b
+  - b5d8e5475247
   - 3e1f6f6d557e
+  - f29602ae449e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -57,17 +57,17 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 7be22100e5e1
   - dc027fa56d55
   - 6519ebe25019
+  - 7be22100e5e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - ca6d970d931c
-  - 28433faa6e42
   - 09855551d713
+  - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,9 +79,9 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 7355bbf5e05f
   - 8fd427007e93
   - fe48aa4ccd5e
+  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -106,9 +106,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
-  - 63662ae295d6
   - 9d1fbff733cf
+  - 63662ae295d6
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,56 +126,56 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 582fd74dc2a1
+  - 14f588312c56
   - 9f2455341fac
-  - 756376aeb1ae
   - b6b5cd37f2a2
-  - 14f588312c56
+  - 756376aeb1ae
   - 3bbe70fef6df
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 30fb23d4c31c
   - 1691af4a0d17
+  - 0ffe5be70caf
+  - a230ea445788
+  - 30fb23d4c31c
   - 73428a792541
   - 989f7c061f35
-  - a230ea445788
-  - 0ffe5be70caf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
   - e94187d661df
+  - 563a19373357
   - 494f0bb4a993
+  - b69c46064ec7
   - 5a5ae61da69c
   - 30f08d74024f
-  - b69c46064ec7
-  - 563a19373357
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 2bba2ff070d9
+  - 7abc5f6dd595
   - d6c7106b7b2e
+  - f77d7b685bb3
   - f31125bb85ea
   - 1bc5a03faf2e
-  - 7abc5f6dd595
-  - f77d7b685bb3
+  - 2bba2ff070d9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
   - d3af38b9c7e1
   - 52af33194019
+  - b3cf4684e9c7
   - 54961e026fe4
   - 520e30695ec3
   - fed64e676186
-  - b3cf4684e9c7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -187,8 +187,8 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 79261884facd
   - 2aea122fbd25
+  - 79261884facd
   - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -203,8 +203,8 @@ tools:
   revisions:
   - 602de62d995b
   - ef2ad746b589
-  - 43798b4caee0
   - 8b3e3657034e
+  - 43798b4caee0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -229,8 +229,8 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
-  - 98cafcbd2578
   - c55643c3d813
+  - 98cafcbd2578
   - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -256,16 +256,16 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 3c1a01127868
   - 370c210d9541
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -289,11 +289,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - 8a22554cdde2
   - bf68eb663bc3
   - eaee459f3d69
-  - d643e3b03500
+  - 8a22554cdde2
   - a17498c603ec
+  - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -305,15 +305,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 41bfbaf3c959
   - 8661b2607b7e
+  - 41bfbaf3c959
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -326,20 +326,20 @@ tools:
   owner: iuc
   revisions:
   - 5c7b70713fb5
+  - cfcf33df7fc0
   - 268d162b9c49
-  - 5b80f544c67f
-  - 5a29ab10dba6
-  - 68693743661e
   - 8f92c2b26e6d
+  - 68693743661e
+  - 5b80f544c67f
   - 9473cd297a76
-  - cfcf33df7fc0
+  - 5a29ab10dba6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
   - 2b3e65a4252f
+  - 09d6806c609e
   - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -352,8 +352,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -365,15 +365,15 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 37213cf56392
-  - e1a9d6fd258d
-  - ac8250086ac3
-  - 809dfc93d593
+  - ba6f87115e13
   - 2c68b0c38785
-  - 200c378d85f3
   - 45083d070fb8
-  - ba6f87115e13
+  - e1a9d6fd258d
+  - 200c378d85f3
+  - 37213cf56392
+  - ac8250086ac3
   - 037a11682176
+  - 809dfc93d593
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel