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Jenkins update build 169.
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galaxy-au-tools-jenkins-bot committed Oct 18, 2023
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27 changes: 27 additions & 0 deletions automated_tool_installation_log.tsv
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Expand Up @@ -5778,3 +5778,30 @@ Update 167 11/10/23 11:24:52 openms_targetedfileconverter False Shed-tools error
Update 167 11/10/23 11:24:55 openms_xmlvalidator False Shed-tools error galaxyp f036e8cf1a55 Staging Installation Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_167/install_log.txt
Update 167 11/10/23 11:24:57 rgrnastar False Shed-tools error iuc 79de45b5069b Staging Installation RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_167/install_log.txt
Update 167 11/10/23 11:24:59 rna_starsolo False Shed-tools error iuc 5ef7ec16b04f Staging Installation Mapping toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_167/install_log.txt
Update 169 18/10/23 16:40:12 alphafold2 False Tests failed galaxy-australia e4a053d67e24 e4a053d67e24 Staging Testing 0/4 Proteomic AI toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 16:49:14 bwa_mem2 False Tests failed iuc bfaa0d22c2e4 bfaa0d22c2e4 Staging Testing 6/7 Mapping toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 16:53:28 cat_bins False Tests failed iuc 31853794ace2 31853794ace2 Staging Testing 0/4 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 17:04:07 chipseeker False Tests failed rnateam 8bd92f2404dd 8bd92f2404dd Staging Testing 0/6 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 17:10:27 dada2_assigntaxonomyaddspecies False Tests failed iuc 7c2100246a2f 7c2100246a2f Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 17:19:46 deeptools_compute_gc_bias False Installed bgruening 26983857c91a 26983857c91a 1/1 1/1 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 17:30:15 deeptools_compute_matrix_operations False Installed bgruening e6d0bff01239 e6d0bff01239 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 17:35:02 deeptools_plot_correlation False Tests failed bgruening bad3ca889618 bad3ca889618 Staging Testing 1/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 18:26:34 edger False Installed iuc 070900306913 070900306913 13/13 13/13 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 18:35:01 eggnog_mapper False Tests failed galaxyp d9c3016f7283 d9c3016f7283 Staging Testing 0/11 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 18:37:07 encyclopedia_encyclopedia False Tests failed galaxyp eac99effe86f eac99effe86f Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 18:39:12 encyclopedia_searchtolib False Tests failed galaxyp fb192dd6658a fb192dd6658a Staging Testing 0/2 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 18:41:17 encyclopedia_walnut False Tests failed galaxyp 0d2e93e01e68 0d2e93e01e68 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 18:50:09 featurecounts False Tests failed iuc f9d49f5cb597 f9d49f5cb597 Staging Testing 6/7 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 19:46:09 hifiasm False Installed bgruening 60024a528cbd 60024a528cbd 14/14 14/14 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 19:57:30 humann False Tests failed iuc fc6c328c292f fc6c328c292f Staging Testing 3/8 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 20:02:36 humann_regroup_table False Tests failed iuc e88b731dad59 e88b731dad59 Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 20:07:22 humann_rename_table False Tests failed iuc 094ad9c068af 094ad9c068af Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 20:10:35 kraken2tax False Tests failed devteam 50bd98b3ae5a 50bd98b3ae5a Staging Testing 0/1 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 20:59:30 macs2 False Tests failed iuc 86e2413cf3f8 86e2413cf3f8 Production Testing 12/12 11/12 ChiP-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 21:13:13 merqury False Tests failed iuc 09c589057ee8 09c589057ee8 Staging Testing 3/6 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 21:15:30 openms_decoydatabase False Tests failed galaxyp 25529df60a81 25529df60a81 Staging Testing 0/4 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 21:17:38 openms_targetedfileconverter False Tests failed galaxyp 9c70a651a53e 9c70a651a53e Staging Testing 0/20 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 21:19:49 openms_xmlvalidator False Tests failed galaxyp f036e8cf1a55 f036e8cf1a55 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 21:38:42 rgrnastar False Tests failed iuc 79de45b5069b 79de45b5069b Staging Testing 14/18 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 22:08:29 rna_starsolo False Tests failed iuc 5ef7ec16b04f 5ef7ec16b04f Staging Testing 12/13 Mapping toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
Update 169 18/10/23 22:39:31 shovill False Installed iuc ee17a294d3a3 ee17a294d3a3 7/7 7/7 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
74 changes: 37 additions & 37 deletions staging.gvl.org.au/annotation.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@ tools:
- name: abricate
owner: iuc
revisions:
- 4efdca267d51
- 6e9aea89e388
- 78c75f134c16
- c2ef298da409
- 6e9aea89e388
- 4efdca267d51
- 3f3e247c053d
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand Down Expand Up @@ -36,38 +36,38 @@ tools:
- name: annotatemyids
owner: iuc
revisions:
- fe3ca740a485
- 4f2967b27e67
- 1aae04680c4b
- 44018dd6b447
- f29602ae449e
- 133f36c29579
- 4f2967b27e67
- b5d8e5475247
- f29602ae449e
- 3e1f6f6d557e
- 1aae04680c4b
- b5d8e5475247
- cd2480f35935
- fe3ca740a485
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
owner: bgruening
revisions:
- bc88856eddab
- e78e25d3b4bd
- bc88856eddab
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus_training
owner: bgruening
revisions:
- 6519ebe25019
- 7be22100e5e1
- dc027fa56d55
- 7be22100e5e1
- 6519ebe25019
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
- ca6d970d931c
- 28433faa6e42
- 09855551d713
- ca6d970d931c
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
Expand All @@ -79,9 +79,9 @@ tools:
- name: barrnap
owner: iuc
revisions:
- 7355bbf5e05f
- 8fd427007e93
- fe48aa4ccd5e
- 7355bbf5e05f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: chipseeker
Expand Down Expand Up @@ -118,33 +118,33 @@ tools:
- name: funannotate_annotate
owner: iuc
revisions:
- 582fd74dc2a1
- 9f2455341fac
- 14f588312c56
- 582fd74dc2a1
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
- 30fb23d4c31c
- 73428a792541
- a230ea445788
- 30fb23d4c31c
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_compare
owner: iuc
revisions:
- 563a19373357
- 30f08d74024f
- 563a19373357
- 494f0bb4a993
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
- f31125bb85ea
- 2bba2ff070d9
- 7abc5f6dd595
- f31125bb85ea
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
Expand All @@ -164,9 +164,9 @@ tools:
- name: gff_to_prot
owner: iuc
revisions:
- 79261884facd
- 07d7991bf205
- 2aea122fbd25
- 79261884facd
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goenrichment
Expand All @@ -178,10 +178,10 @@ tools:
- name: goseq
owner: iuc
revisions:
- 8b3e3657034e
- 43798b4caee0
- ef2ad746b589
- 8b3e3657034e
- 602de62d995b
- 43798b4caee0
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goslimmer
Expand All @@ -207,8 +207,8 @@ tools:
owner: bgruening
revisions:
- 98cafcbd2578
- 74810db257cc
- c55643c3d813
- 74810db257cc
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: jcvi_gff_stats
Expand All @@ -233,16 +233,16 @@ tools:
- name: maker
owner: iuc
revisions:
- 3c1a01127868
- d46d803ca6cc
- 370c210d9541
- 3c1a01127868
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
- 033755194fe9
- 624606f7c996
- 033755194fe9
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand All @@ -266,11 +266,11 @@ tools:
- name: prokka
owner: crs4
revisions:
- 8a22554cdde2
- bf68eb663bc3
- a17498c603ec
- d643e3b03500
- 8a22554cdde2
- eaee459f3d69
- a17498c603ec
- bf68eb663bc3
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: red
Expand All @@ -282,15 +282,15 @@ tools:
- name: repeat_masker
owner: bgruening
revisions:
- 3f987772e283
- ba6d2c32f797
- 3f987772e283
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: repeatmodeler
owner: csbl
revisions:
- 41bfbaf3c959
- 8661b2607b7e
- 41bfbaf3c959
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: rgi
Expand All @@ -308,21 +308,21 @@ tools:
- name: snpeff
owner: iuc
revisions:
- 8f92c2b26e6d
- cfcf33df7fc0
- 268d162b9c49
- 5b80f544c67f
- 5c7b70713fb5
- 5a29ab10dba6
- 68693743661e
- 268d162b9c49
- 5c7b70713fb5
- cfcf33df7fc0
- 8f92c2b26e6d
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
- 09d6806c609e
- 2b3e65a4252f
- 5fab4f81391d
- 09d6806c609e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snptools
Expand All @@ -346,22 +346,22 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
- 2c68b0c38785
- e1a9d6fd258d
- ac8250086ac3
- 45083d070fb8
- e1a9d6fd258d
- ba6f87115e13
- 37213cf56392
- 809dfc93d593
- 37213cf56392
- 200c378d85f3
- 037a11682176
- 2c68b0c38785
- 45083d070fb8
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
owner: iuc
revisions:
- f50807720df1
- 8fc50fe60127
- f50807720df1
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: trna_prediction
Expand Down
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