Jenkins install build 1677.

usegalaxy-au · Oct 16, 2024 · ad9d1c4 · ad9d1c4
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7944,3 +7944,4 @@ Update	213	09/10/24 20:35:18	umi_tools_whitelist	False	Installed	iuc	e4e12f0b3af
 Install	1671	15/10/24 02:20:57	plot_ragtag_paf	True	Shed-tools error	galaxy-australia		latest	Staging Installation			Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1671/install_log.txt
 Install	1673	15/10/24 02:33:30	plot_ragtag_paf	True	Tests failed	galaxy-australia	94e0834ae4ed	latest	Staging Testing	0/3		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1673/install_log.txt
 Install	1675	15/10/24 03:11:07	gprofiler_gost	True	Tests failed	iuc	bf39cdd007f5	latest	Staging Testing	0/2		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1675/install_log.txt
+Install	1677	16/10/24 00:02:20	plot_ragtag_paf	True	Installed	galaxy-australia	c1bed78b9ed5	latest		3/3		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1677/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,25 +2,25 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
+  - 3f3e247c053d
+  - 78c75f134c16
   - 4efdca267d51
   - c2ef298da409
-  - 78c75f134c16
   - 6e9aea89e388
-  - 3f3e247c053d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 1dd7adc21b6d
   - 8dc7512c9dc9
+  - 1dd7adc21b6d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
@@ -33,30 +33,30 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - d6c074a93c51
   - 1b52f0c8ad7f
+  - d6c074a93c51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - b5d8e5475247
-  - 44018dd6b447
-  - 1aae04680c4b
-  - cd2480f35935
   - a79ee60b6926
-  - f29602ae449e
   - 3e1f6f6d557e
+  - b5d8e5475247
+  - cd2480f35935
+  - 4f2967b27e67
+  - 1aae04680c4b
   - 133f36c29579
   - fe3ca740a485
-  - 4f2967b27e67
+  - f29602ae449e
+  - 44018dd6b447
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
@@ -71,27 +71,27 @@ tools:
 - name: augustus
   owner: bgruening
   revisions:
+  - 28433faa6e42
+  - bd0e53f3a891
   - ca6d970d931c
   - 09855551d713
-  - bd0e53f3a891
-  - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
   - 92eee5f31117
   - da5f1924bb2e
-  - d77802fe76f7
   - 728dacaf08a9
+  - d77802fe76f7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
-  - 7355bbf5e05f
   - 8fd427007e93
+  - 7355bbf5e05f
+  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -103,8 +103,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -116,17 +116,17 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
+  - 1ac12c0cc7a0
   - 7ccc6234b54e
   - 8e9e228c54c4
-  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
   - 9d1fbff733cf
-  - d9c3016f7283
   - 63662ae295d6
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -150,61 +150,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 756376aeb1ae
   - 3bbe70fef6df
-  - 582fd74dc2a1
+  - 14f588312c56
   - b6b5cd37f2a2
+  - 756376aeb1ae
+  - 582fd74dc2a1
   - 9c15ca7e764e
   - 9f2455341fac
-  - 14f588312c56
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - a230ea445788
-  - 30fb23d4c31c
-  - 989f7c061f35
+  - 1691af4a0d17
+  - 0ffe5be70caf
   - 73428a792541
+  - 30fb23d4c31c
   - 8e1ace8f77c6
-  - 0ffe5be70caf
-  - 1691af4a0d17
+  - 989f7c061f35
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 57c6718cbfcc
-  - e94187d661df
   - 0418d28136de
+  - 57c6718cbfcc
+  - 30f08d74024f
   - 563a19373357
-  - 5a5ae61da69c
+  - e94187d661df
   - 494f0bb4a993
-  - 30f08d74024f
+  - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
   - d6c7106b7b2e
-  - 2bba2ff070d9
   - 1bc5a03faf2e
-  - f31125bb85ea
+  - 2bba2ff070d9
   - 7abc5f6dd595
   - f77d7b685bb3
   - 4b96ced19f75
+  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 54961e026fe4
-  - b3cf4684e9c7
-  - d3af38b9c7e1
   - 520e30695ec3
-  - d77fdcca400e
   - fed64e676186
+  - 54961e026fe4
+  - d3af38b9c7e1
+  - b3cf4684e9c7
   - 52af33194019
+  - d77fdcca400e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -230,8 +230,8 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
   - 43798b4caee0
+  - 602de62d995b
   - ef2ad746b589
   - 8b3e3657034e
   tool_panel_section_label: Annotation
@@ -242,12 +242,6 @@ tools:
   - de3e053bd6a5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
-- name: gprofiler_gost
-  owner: iuc
-  revisions:
-  - bf39cdd007f5
-  tool_panel_section_label: Annotation
-  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: helixer
   owner: genouest
   revisions:
@@ -270,9 +264,9 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
-  - 74810db257cc
   - 98cafcbd2578
   - c55643c3d813
+  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -290,25 +284,25 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 3c1a01127868
   - d46d803ca6cc
   - 370c210d9541
+  - 3c1a01127868
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
   - 033755194fe9
-  - 624606f7c996
   - b815ec682418
   - c8ac28e8ac44
+  - 624606f7c996
   - e95d52d295d7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -351,11 +345,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - eaee459f3d69
+  - bf68eb663bc3
   - 8a22554cdde2
-  - d643e3b03500
   - a17498c603ec
-  - bf68eb663bc3
+  - d643e3b03500
+  - eaee459f3d69
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -367,8 +361,8 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
@@ -399,22 +393,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - cfcf33df7fc0
+  - 268d162b9c49
+  - 5b80f544c67f
+  - 8f92c2b26e6d
   - 5a29ab10dba6
   - 6322be79bd8e
-  - 8f92c2b26e6d
-  - 5b80f544c67f
-  - 5c7b70713fb5
-  - 268d162b9c49
-  - cfcf33df7fc0
   - 68693743661e
+  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
-  - 09d6806c609e
   - 5fab4f81391d
+  - 09d6806c609e
+  - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -426,8 +420,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -439,24 +433,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 45083d070fb8
   - 037a11682176
   - ac8250086ac3
-  - 809dfc93d593
+  - 37213cf56392
   - ba6f87115e13
+  - 809dfc93d593
+  - e1a9d6fd258d
   - 200c378d85f3
   - 51dd22484644
-  - e1a9d6fd258d
-  - 37213cf56392
-  - 4839e590cb26
+  - 45083d070fb8
   - d03af1c7002c
+  - 4839e590cb26
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm