Jenkins install build 1398.

usegalaxy-au · Jan 16, 2024 · b793f8f · b793f8f
1 parent 90a12ff
commit b793f8f
Show file tree

Hide file tree

Showing 98 changed files with 2,256 additions and 2,248 deletions.
diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6141,3 +6141,4 @@ Install	1390	15/01/24 13:09:19	data_manager_pharokka	True	Shed-tools error	iuc	5
 Install	1392	15/01/24 13:12:47	data_manager_pharokka	True	Already Installed	iuc	50caca83e7c9	50caca83e7c9	Production Installation			None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1392/install_log.txt
 Install	1394	16/01/24 08:57:21	orthofinder_onlygroups	True	Tests failed	iuc	b3d25fae5389	latest	Production Testing	0/0	2/9	Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1394/install_log.txt
 Install	1396	16/01/24 09:38:04	orthofinder_onlygroups	False	Already Installed	iuc	b3d25fae5389	latest	Production Installation	9/9		Phylogenetics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1396/install_log.txt
+Install	1398	16/01/24 11:00:27	helixer	True	Installed	genouest	7bc75dd0f782	latest				Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1398/install_log.txt
diff --git a/requests/helixer.yml b/requests/helixer.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 4efdca267d51
   - c2ef298da409
-  - 78c75f134c16
-  - 3f3e247c053d
+  - 4efdca267d51
   - 6e9aea89e388
+  - 3f3e247c053d
+  - 78c75f134c16
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,38 +36,38 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - cd2480f35935
-  - 133f36c29579
   - fe3ca740a485
-  - 44018dd6b447
   - 4f2967b27e67
-  - 1aae04680c4b
+  - cd2480f35935
+  - f29602ae449e
   - b5d8e5475247
+  - 1aae04680c4b
+  - 44018dd6b447
   - 3e1f6f6d557e
-  - f29602ae449e
+  - 133f36c29579
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
   - dc027fa56d55
-  - 6519ebe25019
   - 7be22100e5e1
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - ca6d970d931c
-  - 09855551d713
   - 28433faa6e42
+  - 09855551d713
+  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,9 +79,9 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - 8fd427007e93
   - fe48aa4ccd5e
   - 7355bbf5e05f
+  - 8fd427007e93
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -93,8 +93,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
@@ -107,8 +107,8 @@ tools:
   owner: galaxyp
   revisions:
   - 9d1fbff733cf
-  - 63662ae295d6
   - d9c3016f7283
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,56 +126,56 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 14f588312c56
-  - 9f2455341fac
-  - b6b5cd37f2a2
-  - 756376aeb1ae
   - 3bbe70fef6df
+  - 756376aeb1ae
+  - 9f2455341fac
   - 582fd74dc2a1
+  - 14f588312c56
+  - b6b5cd37f2a2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
+  - 989f7c061f35
+  - a230ea445788
   - 1691af4a0d17
+  - 73428a792541
   - 0ffe5be70caf
-  - a230ea445788
   - 30fb23d4c31c
-  - 73428a792541
-  - 989f7c061f35
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - e94187d661df
   - 563a19373357
   - 494f0bb4a993
-  - b69c46064ec7
   - 5a5ae61da69c
+  - b69c46064ec7
   - 30f08d74024f
+  - e94187d661df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 7abc5f6dd595
-  - d6c7106b7b2e
   - f77d7b685bb3
-  - f31125bb85ea
   - 1bc5a03faf2e
   - 2bba2ff070d9
+  - 7abc5f6dd595
+  - d6c7106b7b2e
+  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - fed64e676186
   - d3af38b9c7e1
-  - 52af33194019
-  - b3cf4684e9c7
   - 54961e026fe4
+  - b3cf4684e9c7
+  - 52af33194019
   - 520e30695ec3
-  - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -188,8 +188,8 @@ tools:
   owner: iuc
   revisions:
   - 2aea122fbd25
-  - 79261884facd
   - 07d7991bf205
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -201,10 +201,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
+  - 43798b4caee0
   - ef2ad746b589
   - 8b3e3657034e
-  - 43798b4caee0
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -213,6 +213,12 @@ tools:
   - de3e053bd6a5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: helixer
+  owner: genouest
+  revisions:
+  - 7bc75dd0f782
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: hmmer3
   owner: iuc
   revisions:
@@ -229,9 +235,9 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
+  - 74810db257cc
   - c55643c3d813
   - 98cafcbd2578
-  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -249,8 +255,8 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
@@ -264,8 +270,8 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - 033755194fe9
   - 624606f7c996
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -291,8 +297,8 @@ tools:
   revisions:
   - bf68eb663bc3
   - eaee459f3d69
-  - 8a22554cdde2
   - a17498c603ec
+  - 8a22554cdde2
   - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -305,15 +311,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -326,21 +332,21 @@ tools:
   owner: iuc
   revisions:
   - 5c7b70713fb5
-  - cfcf33df7fc0
-  - 268d162b9c49
-  - 8f92c2b26e6d
-  - 68693743661e
   - 5b80f544c67f
   - 9473cd297a76
+  - 8f92c2b26e6d
+  - 68693743661e
   - 5a29ab10dba6
+  - 268d162b9c49
+  - cfcf33df7fc0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
   - 2b3e65a4252f
-  - 09d6806c609e
   - 5fab4f81391d
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -365,22 +371,22 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - ba6f87115e13
+  - 809dfc93d593
   - 2c68b0c38785
+  - 037a11682176
+  - 37213cf56392
   - 45083d070fb8
   - e1a9d6fd258d
-  - 200c378d85f3
-  - 37213cf56392
   - ac8250086ac3
-  - 037a11682176
-  - 809dfc93d593
+  - ba6f87115e13
+  - 200c378d85f3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction