Jenkins install build 1364.

usegalaxy-au · Dec 7, 2023 · b8ba011 · b8ba011
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Showing 95 changed files with 2,192 additions and 2,188 deletions.
diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6079,3 +6079,4 @@ Update	175	06/12/23 16:39:44	samtools_view	False	Tests failed	iuc	6be888be75f9	6
 Update	175	06/12/23 17:11:16	scanpy_cluster_reduce_dimension	False	Installed	iuc	6acb08931836	6acb08931836		12/12	12/12	Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_175/install_log.txt
 Update	175	06/12/23 17:21:30	scanpy_filter	False	Tests failed	iuc	a03ff8633507	a03ff8633507	Staging Testing	7/8		Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_175/install_log.txt
 Update	175	06/12/23 17:26:45	scanpy_normalize	False	Tests failed	iuc	94c19fb1281c	94c19fb1281c	Staging Testing	2/4		Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_175/install_log.txt
+Install	1364	07/12/23 11:03:21	autodock_vina_prepare_ligand	True	Installed	bgruening	50871000e977	50871000e977		1/1	1/1	ChemicalToolBox	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1364/install_log.txt
diff --git a/requests/autodock_vina_prepare_ligand.yml b/requests/autodock_vina_prepare_ligand.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -3,9 +3,9 @@ tools:
   owner: iuc
   revisions:
   - 6e9aea89e388
-  - 3f3e247c053d
   - c2ef298da409
   - 78c75f134c16
+  - 3f3e247c053d
   - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
+  - 4f2967b27e67
   - b5d8e5475247
+  - cd2480f35935
+  - fe3ca740a485
+  - f29602ae449e
   - 1aae04680c4b
   - 44018dd6b447
-  - 4f2967b27e67
-  - fe3ca740a485
-  - 3e1f6f6d557e
-  - cd2480f35935
   - 133f36c29579
-  - f29602ae449e
+  - 3e1f6f6d557e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -58,16 +58,16 @@ tools:
   owner: bgruening
   revisions:
   - 6519ebe25019
-  - dc027fa56d55
   - 7be22100e5e1
+  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
+  - ca6d970d931c
   - 28433faa6e42
   - 09855551d713
-  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,8 +79,8 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
   - 8fd427007e93
+  - fe48aa4ccd5e
   - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -99,8 +99,8 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
   - d9c3016f7283
+  - 63662ae295d6
   - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -119,20 +119,20 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 582fd74dc2a1
   - 9f2455341fac
-  - 14f588312c56
   - b6b5cd37f2a2
+  - 14f588312c56
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 73428a792541
   - 30fb23d4c31c
   - 0ffe5be70caf
-  - a230ea445788
   - 989f7c061f35
+  - a230ea445788
+  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
@@ -147,21 +147,21 @@ tools:
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 1bc5a03faf2e
   - f31125bb85ea
-  - 7abc5f6dd595
   - 2bba2ff070d9
   - d6c7106b7b2e
+  - 7abc5f6dd595
+  - 1bc5a03faf2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 54961e026fe4
   - 52af33194019
   - d3af38b9c7e1
-  - b3cf4684e9c7
   - 520e30695ec3
+  - b3cf4684e9c7
+  - 54961e026fe4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -173,9 +173,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 2aea122fbd25
-  - 07d7991bf205
   - 79261884facd
+  - 07d7991bf205
+  - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -187,10 +187,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 8b3e3657034e
+  - 43798b4caee0
   - ef2ad746b589
   - 602de62d995b
-  - 43798b4caee0
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -235,8 +235,8 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
@@ -250,8 +250,8 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -277,9 +277,9 @@ tools:
   revisions:
   - d643e3b03500
   - eaee459f3d69
-  - a17498c603ec
-  - 8a22554cdde2
   - bf68eb663bc3
+  - 8a22554cdde2
+  - a17498c603ec
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -311,22 +311,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 5b80f544c67f
-  - 9473cd297a76
+  - 5c7b70713fb5
   - 268d162b9c49
+  - cfcf33df7fc0
   - 5a29ab10dba6
   - 68693743661e
-  - cfcf33df7fc0
-  - 5c7b70713fb5
   - 8f92c2b26e6d
+  - 9473cd297a76
+  - 5b80f544c67f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
-  - 5fab4f81391d
   - 2b3e65a4252f
+  - 5fab4f81391d
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -338,8 +338,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -351,15 +351,15 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 2c68b0c38785
-  - e1a9d6fd258d
+  - ba6f87115e13
   - 45083d070fb8
-  - 809dfc93d593
   - 37213cf56392
-  - 037a11682176
-  - ba6f87115e13
-  - ac8250086ac3
+  - 2c68b0c38785
   - 200c378d85f3
+  - ac8250086ac3
+  - e1a9d6fd258d
+  - 037a11682176
+  - 809dfc93d593
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel