Jenkins install build 1343.

usegalaxy-au · Oct 31, 2023 · ce4caac · ce4caac
1 parent 4fc0c90
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -5807,3 +5807,4 @@ Update	169	18/10/23 22:08:29	rna_starsolo	False	Tests failed	iuc	5ef7ec16b04f	5e
 Update	169	18/10/23 22:39:31	shovill	False	Installed	iuc	ee17a294d3a3	ee17a294d3a3		7/7	7/7	Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_169/install_log.txt
 Install	1340	20/10/23 09:30:06	kraken_biom	True	Installed	iuc	65eb9962d272	65eb9962d272		5/5	5/5	Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1340/install_log.txt
 Install	1340	20/10/23 09:55:14	krakentools_extract_kraken_reads	True	Installed	iuc	f329328da134	f329328da134		11/11	11/11	Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1340/install_log.txt
+Install	1343	31/10/23 10:27:46	rgi	True	Tests failed	card	84bd24ac33fd	84bd24ac33fd	Production Testing		0/1	Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1343/install_log.txt
diff --git a/requests/requested_tool.yml b/requests/requested_tool.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 3f3e247c053d
-  - 6e9aea89e388
-  - 78c75f134c16
   - 4efdca267d51
+  - 78c75f134c16
   - c2ef298da409
+  - 3f3e247c053d
+  - 6e9aea89e388
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
+  - 1aae04680c4b
+  - 44018dd6b447
+  - f29602ae449e
   - 133f36c29579
+  - 4f2967b27e67
+  - b5d8e5475247
   - 3e1f6f6d557e
   - fe3ca740a485
-  - f29602ae449e
-  - b5d8e5475247
   - cd2480f35935
-  - 1aae04680c4b
-  - 4f2967b27e67
-  - 44018dd6b447
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -57,17 +57,17 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
+  - 7be22100e5e1
   - 6519ebe25019
   - dc027fa56d55
-  - 7be22100e5e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - ca6d970d931c
   - 09855551d713
   - 28433faa6e42
+  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,8 +79,8 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
   - 8fd427007e93
+  - fe48aa4ccd5e
   - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -118,9 +118,9 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - 14f588312c56
   - 582fd74dc2a1
   - 9f2455341fac
-  - 14f588312c56
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
@@ -135,24 +135,24 @@ tools:
   owner: iuc
   revisions:
   - 563a19373357
-  - 30f08d74024f
   - 494f0bb4a993
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 2bba2ff070d9
   - f31125bb85ea
   - 7abc5f6dd595
+  - 2bba2ff070d9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - b3cf4684e9c7
   - d3af38b9c7e1
   - 52af33194019
-  - b3cf4684e9c7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -164,9 +164,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 07d7991bf205
   - 79261884facd
   - 2aea122fbd25
-  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -178,10 +178,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 8b3e3657034e
-  - 43798b4caee0
   - ef2ad746b589
+  - 8b3e3657034e
   - 602de62d995b
+  - 43798b4caee0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -199,15 +199,15 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - c55643c3d813
   - 98cafcbd2578
+  - c55643c3d813
   - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -241,8 +241,8 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - 033755194fe9
   - 624606f7c996
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -266,11 +266,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - 8a22554cdde2
   - d643e3b03500
   - bf68eb663bc3
   - a17498c603ec
   - eaee459f3d69
-  - 8a22554cdde2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -293,12 +293,6 @@ tools:
   - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
-- name: rgi
-  owner: card
-  revisions:
-  - 84bd24ac33fd
-  tool_panel_section_label: Annotation
-  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
   owner: iuc
   revisions:
@@ -308,21 +302,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 8f92c2b26e6d
+  - cfcf33df7fc0
   - 5a29ab10dba6
   - 68693743661e
-  - 8f92c2b26e6d
-  - 5c7b70713fb5
-  - 5b80f544c67f
   - 268d162b9c49
-  - cfcf33df7fc0
+  - 5b80f544c67f
+  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
   - 09d6806c609e
   - 5fab4f81391d
+  - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -346,14 +340,14 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - e1a9d6fd258d
-  - 37213cf56392
   - ac8250086ac3
   - 45083d070fb8
+  - 37213cf56392
   - 200c378d85f3
   - ba6f87115e13
-  - 037a11682176
+  - e1a9d6fd258d
   - 809dfc93d593
+  - 037a11682176
   - 2c68b0c38785
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu