Jenkins update build 177.

usegalaxy-au · Dec 20, 2023 · d16bb4d · d16bb4d
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6116,3 +6116,22 @@ Install	1383	20/12/23 15:29:45	funannotate_compare	False	Installed	iuc	b69c46064
 Install	1383	20/12/23 15:30:42	funannotate_predict	False	Installed	iuc	f77d7b685bb3	f77d7b685bb3				Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1383/install_log.txt
 Install	1383	20/12/23 15:31:58	humann	False	Installed	iuc	fc6c328c292f	fc6c328c292f				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1383/install_log.txt
 Install	1383	20/12/23 15:33:00	ncbi_blast_plus	False	Installed	devteam	d999e774072a	d999e774072a				Blast +	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1383/install_log.txt
+Update	177	20/12/23 17:11:18	cat_bins	False	Tests failed	iuc	31853794ace2	31853794ace2	Staging Testing	0/4		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 17:51:32	cutadapt	False	Tests failed	lparsons	9845c649f41b	9845c649f41b	Staging Testing	42/43		FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 17:55:59	data_manager_build_kraken2_database	False	Installed	iuc	e4b4837f06f5	e4b4837f06f5		0/0	0/0	None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 18:00:07	data_manager_cat	False	Installed	iuc	472dabcb03bf	472dabcb03bf		0/0	0/0	None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 19:03:37	data_manager_diamond_database_builder	False	Errored	bgruening	c1aaeaced1b6	c1aaeaced1b6	Production Installation	0/0		None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 19:07:51	data_manager_metaphlan_database_downloader	False	Installed	iuc	0cb27ea69dc1	0cb27ea69dc1		0/0	0/0	None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 20:11:21	data_manager_mothur_toolsuite	False	Errored	iuc	f21e77139fb5	f21e77139fb5	Production Installation	0/0		None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 21:14:51	data_manager_sam_fasta_index_builder	False	Errored	devteam	a256278e5bff	a256278e5bff	Production Installation	0/0		None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 21:42:13	diffbind	False	Tests failed	bgruening	2605cbdaa7d8	2605cbdaa7d8	Production Testing	4/4	3/4	ChiP-seq	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 21:44:16	encyclopedia_encyclopedia	False	Tests failed	galaxyp	eac99effe86f	eac99effe86f	Staging Testing	0/1		Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 21:46:17	encyclopedia_walnut	False	Tests failed	galaxyp	0d2e93e01e68	0d2e93e01e68	Staging Testing	0/1		Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:01:29	gffread	False	Installed	devteam	3e436657dcd0	3e436657dcd0		13/13	0/0	Convert Formats	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:03:33	openms_targetedfileconverter	False	Tests failed	galaxyp	9c70a651a53e	9c70a651a53e	Staging Testing	0/20		Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:05:39	openms_xmlvalidator	False	Tests failed	galaxyp	f036e8cf1a55	f036e8cf1a55	Staging Testing	0/1		Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:21:12	pretext_map	False	Installed	iuc	511e5e3cd55e	511e5e3cd55e		2/2	2/2	Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:28:30	pretext_snapshot	False	Installed	iuc	0a10fddd97d2	0a10fddd97d2		2/2	2/2	Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:44:42	sample_seqs	False	Tests failed	peterjc	bdaefd241921	bdaefd241921	Staging Testing	12/16		Filter and Sort	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:47:34	samtools_split	False	Tests failed	devteam	bd850490c7f1	bd850490c7f1	Staging Testing	0/1		SAM/BAM	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
+Update	177	20/12/23 22:48:19	unicycler	False	Installed	iuc	8f9f06995f98	8f9f06995f98				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
+  - 4efdca267d51
   - c2ef298da409
-  - 78c75f134c16
   - 6e9aea89e388
+  - 78c75f134c16
   - 3f3e247c053d
-  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,22 +36,22 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 3e1f6f6d557e
+  - cd2480f35935
   - 1aae04680c4b
-  - b5d8e5475247
+  - fe3ca740a485
   - 4f2967b27e67
+  - b5d8e5475247
+  - 44018dd6b447
   - 133f36c29579
+  - 3e1f6f6d557e
   - f29602ae449e
-  - fe3ca740a485
-  - 44018dd6b447
-  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - bc88856eddab
   - e78e25d3b4bd
+  - bc88856eddab
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
@@ -65,9 +65,9 @@ tools:
 - name: augustus
   owner: bgruening
   revisions:
-  - 09855551d713
   - ca6d970d931c
   - 28433faa6e42
+  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,8 +79,8 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
   - 8fd427007e93
+  - fe48aa4ccd5e
   - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -106,8 +106,8 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
   - 63662ae295d6
+  - d9c3016f7283
   - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -126,56 +126,56 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 14f588312c56
-  - 9f2455341fac
   - b6b5cd37f2a2
-  - 582fd74dc2a1
   - 756376aeb1ae
+  - 582fd74dc2a1
+  - 9f2455341fac
   - 3bbe70fef6df
+  - 14f588312c56
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - a230ea445788
   - 30fb23d4c31c
-  - 0ffe5be70caf
   - 1691af4a0d17
-  - 73428a792541
+  - 0ffe5be70caf
   - 989f7c061f35
+  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
+  - 30f08d74024f
   - 494f0bb4a993
   - 5a5ae61da69c
   - 563a19373357
-  - e94187d661df
   - b69c46064ec7
-  - 30f08d74024f
+  - e94187d661df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 1bc5a03faf2e
+  - d6c7106b7b2e
   - 7abc5f6dd595
-  - f77d7b685bb3
-  - f31125bb85ea
   - 2bba2ff070d9
-  - d6c7106b7b2e
+  - f31125bb85ea
+  - 1bc5a03faf2e
+  - f77d7b685bb3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
   - d3af38b9c7e1
+  - fed64e676186
   - b3cf4684e9c7
   - 52af33194019
-  - fed64e676186
-  - 54961e026fe4
   - 520e30695ec3
+  - 54961e026fe4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -187,9 +187,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 2aea122fbd25
   - 79261884facd
   - 07d7991bf205
-  - 2aea122fbd25
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -201,8 +201,8 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - ef2ad746b589
   - 8b3e3657034e
+  - ef2ad746b589
   - 43798b4caee0
   - 602de62d995b
   tool_panel_section_label: Annotation
@@ -222,8 +222,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -249,16 +249,16 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 3c1a01127868
-  - 370c210d9541
   - d46d803ca6cc
+  - 370c210d9541
+  - 3c1a01127868
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
@@ -290,10 +290,10 @@ tools:
   owner: crs4
   revisions:
   - d643e3b03500
-  - a17498c603ec
   - bf68eb663bc3
-  - eaee459f3d69
   - 8a22554cdde2
+  - eaee459f3d69
+  - a17498c603ec
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -325,21 +325,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 8f92c2b26e6d
-  - 5a29ab10dba6
+  - 5c7b70713fb5
   - cfcf33df7fc0
-  - 5b80f544c67f
   - 68693743661e
-  - 268d162b9c49
-  - 5c7b70713fb5
+  - 5a29ab10dba6
+  - 5b80f544c67f
   - 9473cd297a76
+  - 8f92c2b26e6d
+  - 268d162b9c49
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 5fab4f81391d
   - 09d6806c609e
+  - 5fab4f81391d
   - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -352,8 +352,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -365,22 +365,22 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - ba6f87115e13
-  - 2c68b0c38785
   - 200c378d85f3
-  - 809dfc93d593
-  - 45083d070fb8
   - e1a9d6fd258d
-  - ac8250086ac3
   - 37213cf56392
+  - 45083d070fb8
+  - ac8250086ac3
+  - 2c68b0c38785
+  - ba6f87115e13
+  - 809dfc93d593
   - 037a11682176
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction