Jenkins install build 1388.

usegalaxy-au · Jan 15, 2024 · e7439eb · e7439eb
1 parent d7652ab
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6136,3 +6136,4 @@ Update	177	20/12/23 22:44:42	sample_seqs	False	Tests failed	peterjc	bdaefd241921
 Update	177	20/12/23 22:47:34	samtools_split	False	Tests failed	devteam	bd850490c7f1	bd850490c7f1	Staging Testing	0/1		SAM/BAM	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
 Update	177	20/12/23 22:48:19	unicycler	False	Installed	iuc	8f9f06995f98	8f9f06995f98				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_177/install_log.txt
 Install	1386	22/12/23 09:45:06	seq_filter_by_id	False	Installed	peterjc	85ef5f5a0562	85ef5f5a0562		6/6	6/6	Filter and Sort	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1386/install_log.txt
+Install	1388	15/01/24 11:12:44	pharokka	True	Tests failed	iuc	2f40d2ccb0eb	latest	Staging Testing	0/2		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1388/install_log.txt
diff --git a/requests/pharokka.yml b/requests/pharokka.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 78c75f134c16
-  - 6e9aea89e388
-  - 3f3e247c053d
   - c2ef298da409
+  - 3f3e247c053d
   - 4efdca267d51
+  - 78c75f134c16
+  - 6e9aea89e388
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 4f2967b27e67
-  - 3e1f6f6d557e
   - 44018dd6b447
-  - 133f36c29579
+  - fe3ca740a485
   - b5d8e5475247
+  - cd2480f35935
+  - 133f36c29579
   - 1aae04680c4b
+  - 4f2967b27e67
+  - 3e1f6f6d557e
   - f29602ae449e
-  - cd2480f35935
-  - fe3ca740a485
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -57,17 +57,17 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
+  - 6519ebe25019
   - 7be22100e5e1
   - dc027fa56d55
-  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
+  - 09855551d713
   - 28433faa6e42
   - ca6d970d931c
-  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
@@ -79,8 +79,8 @@ tools:
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
   - 8fd427007e93
+  - fe48aa4ccd5e
   - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -107,8 +107,8 @@ tools:
   owner: galaxyp
   revisions:
   - 63662ae295d6
-  - d9c3016f7283
   - 9d1fbff733cf
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -127,55 +127,55 @@ tools:
   owner: iuc
   revisions:
   - 3bbe70fef6df
-  - b6b5cd37f2a2
   - 14f588312c56
+  - 582fd74dc2a1
+  - b6b5cd37f2a2
   - 9f2455341fac
   - 756376aeb1ae
-  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - a230ea445788
-  - 989f7c061f35
-  - 0ffe5be70caf
   - 30fb23d4c31c
   - 1691af4a0d17
+  - 989f7c061f35
   - 73428a792541
+  - 0ffe5be70caf
+  - a230ea445788
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 563a19373357
+  - e94187d661df
   - b69c46064ec7
-  - 30f08d74024f
   - 5a5ae61da69c
-  - e94187d661df
+  - 563a19373357
   - 494f0bb4a993
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 2bba2ff070d9
-  - f31125bb85ea
   - 1bc5a03faf2e
-  - 7abc5f6dd595
-  - f77d7b685bb3
   - d6c7106b7b2e
+  - f31125bb85ea
+  - 2bba2ff070d9
+  - f77d7b685bb3
+  - 7abc5f6dd595
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - fed64e676186
-  - d3af38b9c7e1
-  - 54961e026fe4
-  - 52af33194019
   - 520e30695ec3
   - b3cf4684e9c7
+  - 54961e026fe4
+  - 52af33194019
+  - d3af38b9c7e1
+  - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -201,10 +201,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
-  - ef2ad746b589
   - 43798b4caee0
   - 8b3e3657034e
+  - ef2ad746b589
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -222,16 +222,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - 98cafcbd2578
   - c55643c3d813
   - 74810db257cc
+  - 98cafcbd2578
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -249,16 +249,16 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 3c1a01127868
-  - d46d803ca6cc
   - 370c210d9541
+  - d46d803ca6cc
+  - 3c1a01127868
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
@@ -286,14 +286,20 @@ tools:
   - 15cff34c2005
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: pharokka
+  owner: iuc
+  revisions:
+  - 2f40d2ccb0eb
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
+  - 8a22554cdde2
   - d643e3b03500
   - a17498c603ec
   - eaee459f3d69
-  - 8a22554cdde2
+  - bf68eb663bc3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -325,14 +331,14 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 5a29ab10dba6
+  - cfcf33df7fc0
+  - 268d162b9c49
+  - 5c7b70713fb5
+  - 8f92c2b26e6d
   - 9473cd297a76
   - 68693743661e
-  - 8f92c2b26e6d
   - 5b80f544c67f
-  - 5c7b70713fb5
-  - cfcf33df7fc0
-  - 5a29ab10dba6
-  - 268d162b9c49
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
@@ -366,21 +372,21 @@ tools:
   owner: iuc
   revisions:
   - 37213cf56392
+  - 45083d070fb8
+  - ba6f87115e13
+  - 809dfc93d593
   - 200c378d85f3
+  - 037a11682176
   - 2c68b0c38785
-  - e1a9d6fd258d
   - ac8250086ac3
-  - ba6f87115e13
-  - 45083d070fb8
-  - 037a11682176
-  - 809dfc93d593
+  - e1a9d6fd258d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction