Jenkins install build 1404.

usegalaxy-au · Jan 18, 2024 · fdc8a6a · fdc8a6a
1 parent 7636e69
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -6155,3 +6155,4 @@ Update	178	17/01/24 13:05:01	openms_xmlvalidator	False	Tests failed	galaxyp	f036
 Update	178	17/01/24 13:23:00	sample_seqs	False	Tests failed	peterjc	bdaefd241921	bdaefd241921	Staging Testing	12/16		Filter and Sort	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_178/install_log.txt
 Update	178	17/01/24 13:26:05	samtools_split	False	Tests failed	devteam	bd850490c7f1	bd850490c7f1	Staging Testing	0/1		SAM/BAM	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_178/install_log.txt
 Update	178	17/01/24 13:27:08	smudgeplot	False	Installed	galaxy-australia	015283de3004	015283de3004				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_178/install_log.txt
+Install	1404	18/01/24 12:34:09	amrfinderplus_data_manager_build	True	Installed	iuc	592ef3959907	592ef3959907		0/0	0/0	None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1404/install_log.txt
diff --git a/requests/amrfinder_dm.yml b/requests/amrfinder_dm.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 4efdca267d51
-  - 3f3e247c053d
   - 6e9aea89e388
-  - c2ef298da409
+  - 4efdca267d51
   - 78c75f134c16
+  - c2ef298da409
+  - 3f3e247c053d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -36,15 +36,15 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 3e1f6f6d557e
-  - cd2480f35935
+  - f29602ae449e
   - 4f2967b27e67
   - b5d8e5475247
-  - 133f36c29579
-  - fe3ca740a485
   - 44018dd6b447
-  - f29602ae449e
   - 1aae04680c4b
+  - fe3ca740a485
+  - 3e1f6f6d557e
+  - 133f36c29579
+  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -57,9 +57,9 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
   - 7be22100e5e1
   - 6519ebe25019
+  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
@@ -73,15 +73,16 @@ tools:
 - name: bakta
   owner: iuc
   revisions:
+  - 728dacaf08a9
   - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
+  - fe48aa4ccd5e
   - 8fd427007e93
   - 7355bbf5e05f
-  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -106,9 +107,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
   - 9d1fbff733cf
   - 63662ae295d6
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -126,55 +127,55 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 9f2455341fac
   - 3bbe70fef6df
+  - 582fd74dc2a1
+  - 14f588312c56
+  - 9f2455341fac
   - b6b5cd37f2a2
   - 756376aeb1ae
-  - 14f588312c56
-  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 989f7c061f35
   - 30fb23d4c31c
-  - 1691af4a0d17
-  - 73428a792541
   - 0ffe5be70caf
+  - 989f7c061f35
+  - 73428a792541
+  - 1691af4a0d17
   - a230ea445788
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 30f08d74024f
-  - 563a19373357
-  - 5a5ae61da69c
   - e94187d661df
   - b69c46064ec7
+  - 30f08d74024f
   - 494f0bb4a993
+  - 563a19373357
+  - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - d6c7106b7b2e
   - f77d7b685bb3
-  - 2bba2ff070d9
-  - 1bc5a03faf2e
   - 7abc5f6dd595
   - f31125bb85ea
+  - d6c7106b7b2e
+  - 2bba2ff070d9
+  - 1bc5a03faf2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 520e30695ec3
   - b3cf4684e9c7
-  - d3af38b9c7e1
   - 52af33194019
   - 54961e026fe4
+  - d3af38b9c7e1
+  - 520e30695ec3
   - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -187,9 +188,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 79261884facd
-  - 2aea122fbd25
   - 07d7991bf205
+  - 2aea122fbd25
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -201,9 +202,9 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 43798b4caee0
-  - 8b3e3657034e
   - ef2ad746b589
+  - 8b3e3657034e
+  - 43798b4caee0
   - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -262,16 +263,16 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 370c210d9541
   - 3c1a01127868
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
+  - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -301,10 +302,10 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - bf68eb663bc3
+  - a17498c603ec
   - d643e3b03500
   - 8a22554cdde2
-  - a17498c603ec
-  - bf68eb663bc3
   - eaee459f3d69
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -337,21 +338,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 5c7b70713fb5
-  - cfcf33df7fc0
-  - 9473cd297a76
+  - 268d162b9c49
+  - 5a29ab10dba6
   - 68693743661e
+  - cfcf33df7fc0
   - 8f92c2b26e6d
-  - 5a29ab10dba6
-  - 268d162b9c49
+  - 9473cd297a76
+  - 5c7b70713fb5
   - 5b80f544c67f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 5fab4f81391d
   - 2b3e65a4252f
+  - 5fab4f81391d
   - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -364,8 +365,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -377,22 +378,22 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 809dfc93d593
-  - 45083d070fb8
-  - ba6f87115e13
   - ac8250086ac3
-  - 37213cf56392
+  - e1a9d6fd258d
+  - 45083d070fb8
   - 2c68b0c38785
   - 200c378d85f3
+  - 809dfc93d593
+  - 37213cf56392
+  - ba6f87115e13
   - 037a11682176
-  - e1a9d6fd258d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: trna_prediction