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Install some IUC tools (part 1) #1023

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Feb 5, 2024
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133 changes: 133 additions & 0 deletions requests/eu_iuc_tools_suite_filtered.yml
Original file line number Diff line number Diff line change
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tools:
- name: transit_hmm
owner: iuc
tool_panel_section_label: Annotation
- name: transit_resampling
owner: iuc
tool_panel_section_label: Annotation
- name: transit_tn5gaps
owner: iuc
tool_panel_section_label: Annotation
- name: samtools_bam_to_cram
owner: iuc
tool_panel_section_label: Convert Formats
- name: ucsc_twobittofa
owner: iuc
tool_panel_section_label: Convert Formats
- name: ucsc_wigtobigwig
owner: iuc
tool_panel_section_label: Convert Formats
- name: ucsc_fatovcf
owner: iuc
tool_panel_section_label: Convert Formats
- name: umi_tools_group
owner: iuc
tool_panel_section_label: FASTA/FASTQ
- name: umi_tools_whitelist
owner: iuc
tool_panel_section_label: FASTA/FASTQ
- name: ggplot2_histogram
owner: iuc
tool_panel_section_label: Graph/Display Data
- name: ggplot2_pca
owner: iuc
tool_panel_section_label: Graph/Display Data
- name: ggplot2_violin
owner: iuc
tool_panel_section_label: Graph/Display Data
- name: humann_associate
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: humann_barplot
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: humann_join_tables
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: humann_reduce_table
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: humann_rna_dna_norm
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: humann_split_table
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: humann_strain_profiler
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: kraken_taxonomy_report
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: krakentools_alpha_diversity
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: krakentools_beta_diversity
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: krakentools_combine_kreports
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: krakentools_kreport2mpa
owner: iuc
tool_panel_section_label: Metagenomic Analysis
- name: medaka_variant_pipeline
owner: iuc
tool_panel_section_label: Nanopore
- name: qualimap_counts
owner: iuc
tool_panel_section_label: RNA-seq
- name: trinity_stats
owner: iuc
tool_panel_section_label: RNA-seq
- name: trinity_super_transcripts
owner: iuc
tool_panel_section_label: RNA-seq
- name: bamtools_split_mapped
owner: iuc
tool_panel_section_label: SAM/BAM
- name: bamtools_split_paired
owner: iuc
tool_panel_section_label: SAM/BAM
- name: bamtools_split_ref
owner: iuc
tool_panel_section_label: SAM/BAM
- name: bamtools_split_tag
owner: iuc
tool_panel_section_label: SAM/BAM
- name: samtools_ampliconclip
owner: iuc
tool_panel_section_label: SAM/BAM
- name: samtools_coverage
owner: iuc
tool_panel_section_label: SAM/BAM
- name: samtools_depth
owner: iuc
tool_panel_section_label: SAM/BAM
- name: samtools_fixmate
owner: iuc
tool_panel_section_label: SAM/BAM
- name: samtools_markdup
owner: iuc
tool_panel_section_label: SAM/BAM
- name: anndata_export
owner: iuc
tool_panel_section_label: Single-cell
- name: raceid_filtnormconf
owner: iuc
tool_panel_section_label: Single-cell
- name: scater_normalize
owner: iuc
tool_panel_section_label: Single-cell
- name: scater_plot_exprs_freq
owner: iuc
tool_panel_section_label: Single-cell
- name: scater_plot_tsne
owner: iuc
tool_panel_section_label: Single-cell
- name: varscan_copynumber
owner: iuc
tool_panel_section_label: Variant Calling
- name: varscan_mpileup
owner: iuc
tool_panel_section_label: Variant Calling
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