Added case to helixer where it will only run using the gpu if the gen…

…ome size is larger than 200Mb
usegalaxy-eu · Sep 10, 2024 · b151958 · b151958
1 parent 1f5e9f0
commit b151958
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -747,12 +747,14 @@ tools:
   toolshed.g2.bx.psu.edu/repos/genouest/helixer/helixer/.*:
     cores: 4
     mem: 30
-    gpus: 1
-    params:
-      singularity_run_extra_arguments: ' --nv '
     scheduling:
       require:
         - singularity
+    rules:
+      - if: input_size >= 0.2
+        gpus: 1
+        params:
+          singularity_run_extra_arguments: ' --nv '
 
   toolshed.g2.bx.psu.edu/repos/iuc/cherri_eval/cherri_eval/.*:
     inherits: basic_docker_tool