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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2023-07-16 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2023-07-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #395](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#395/) | ||
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| ## Metabolomics | ||
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| - matchms_convert was updated to [b9cc12600553](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/b9cc12600553) | ||
| - matchms_filtering was updated to [a177ac3c752c](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/a177ac3c752c) | ||
| - matchms_fingerprint_similarity was updated to [84af792d3a78](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/84af792d3a78) | ||
| - matchms_formatter was updated to [1b09315a3f87](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/1b09315a3f87) | ||
| - matchms_metadata_export was updated to [f04610d25411](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/f04610d25411) | ||
| - matchms_metadata_match was updated to [03bc9b7f40f6](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/03bc9b7f40f6) | ||
| - matchms_networking was updated to [8147d93d372d](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/8147d93d372d) | ||
| - matchms_similarity was updated to [e5010b19d64d](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_similarity/e5010b19d64d) | ||
| - matchms_spectral_similarity was updated to [9ff95a1a2705](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/9ff95a1a2705) | ||
| - matchms_split was updated to [0cf68b536cd1](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/0cf68b536cd1) | ||
| - ramclustr was updated to [9b716db0a786](https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr/9b716db0a786) | ||
| - ramclustr_define_experiment was updated to [5f2b58dadb39](https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr_define_experiment/5f2b58dadb39) | ||
| - recetox_xmsannotator_advanced was updated to [cfd2e19f00a9](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_xmsannotator_advanced/cfd2e19f00a9) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
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| ## Proteomics | ||
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| - openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## hca_sc_scanpy_tools | ||
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| - anndata_ops was updated to [a0274bc43b7e](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/anndata_ops/a0274bc43b7e) | ||
| - scanpy_find_markers was updated to [64259337506f](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_markers/64259337506f) | ||
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| ## hca_sc_utils_viz | ||
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| - ucsc_cell_browser was updated to [97483e5ec21e](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/ucsc_cell_browser/97483e5ec21e) | ||
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| ## Annotation | ||
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| - miniprot was updated to [52bdc302299b](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot/52bdc302299b) | ||
| - miniprot_index was updated to [3ccb407501d8](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot_index/3ccb407501d8) | ||
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| ## Metagenomic Analysis | ||
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| - dram_annotate was updated to [4058af4457c0](https://toolshed.g2.bx.psu.edu/view/iuc/dram_annotate/4058af4457c0) | ||
| - dram_distill was updated to [9471e3d97837](https://toolshed.g2.bx.psu.edu/view/iuc/dram_distill/9471e3d97837) | ||
| - dram_merge_annotations was updated to [96c0067106ec](https://toolshed.g2.bx.psu.edu/view/iuc/dram_merge_annotations/96c0067106ec) | ||
| - dram_neighborhoods was updated to [d1f8d32bbe3b](https://toolshed.g2.bx.psu.edu/view/iuc/dram_neighborhoods/d1f8d32bbe3b) | ||
| - dram_strainer was updated to [684676cd6512](https://toolshed.g2.bx.psu.edu/view/iuc/dram_strainer/684676cd6512) | ||
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| ## Phylogenetics | ||
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| - pangolin was updated to [9d61d3fa046c](https://toolshed.g2.bx.psu.edu/view/iuc/pangolin/9d61d3fa046c) | ||
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| ## Variant Calling | ||
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| - smgu_frameshift_deletions_checks was updated to [029d90b0c4f6](https://toolshed.g2.bx.psu.edu/view/iuc/smgu_frameshift_deletions_checks/029d90b0c4f6) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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