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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-08-04 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-08-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #468](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#468/) | ||
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| ## Climate Analysis | ||
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| - divand_full_analysis was updated to [484930fdc002](https://toolshed.g2.bx.psu.edu/view/ecology/divand_full_analysis/484930fdc002) | ||
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| ## Get Data | ||
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| - argo_getdata was updated to [28c8f085d1b4](https://toolshed.g2.bx.psu.edu/view/ecology/argo_getdata/28c8f085d1b4) | ||
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| ## Metabolomics | ||
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| - recetox_aplcms_align_features was updated to [79ad928a0dae](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_align_features/79ad928a0dae) | ||
| - recetox_aplcms_compute_clusters was updated to [f3a18e020cdd](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_compute_clusters/f3a18e020cdd) | ||
| - recetox_aplcms_compute_template was updated to [dfebc82ba1f0](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_compute_template/dfebc82ba1f0) | ||
| - recetox_aplcms_correct_time was updated to [9064aecc78a7](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_correct_time/9064aecc78a7) | ||
| - recetox_aplcms_generate_feature_table was updated to [b3413f335327](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_generate_feature_table/b3413f335327) | ||
| - recetox_aplcms_merge_known_table was updated to [17a48d0a80f4](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_merge_known_table/17a48d0a80f4) | ||
| - recetox_aplcms_recover_weaker_signals was updated to [d7f5878a98c3](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_recover_weaker_signals/d7f5878a98c3) | ||
| - recetox_aplcms_remove_noise was updated to [ffbabefbd2e2](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_remove_noise/ffbabefbd2e2) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## Proteomics | ||
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| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
| - qupath_roi_splitter was updated to [17c54a716a5b](https://toolshed.g2.bx.psu.edu/view/galaxyp/qupath_roi_splitter/17c54a716a5b) | ||
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| ## ChemicalToolBox | ||
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| - alphafold2 was updated to [6ab1a261520a](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/alphafold2/6ab1a261520a) | ||
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| ## Graph/Display Data | ||
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| - jbrowse2 was updated to [878c27dfea9d](https://toolshed.g2.bx.psu.edu/view/fubar/jbrowse2/878c27dfea9d) | ||
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| ## Imaging | ||
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| - bioimage_inference was updated to [caea9ee1ffac](https://toolshed.g2.bx.psu.edu/view/bgruening/bioimage_inference/caea9ee1ffac) | ||
| - scimap_anndata_to_csv was updated to [302ddf03402f](https://toolshed.g2.bx.psu.edu/view/goeckslab/scimap_anndata_to_csv/302ddf03402f) | ||
| - background_removal was updated to [6e9e98a7be4e](https://toolshed.g2.bx.psu.edu/view/imgteam/background_removal/6e9e98a7be4e) | ||
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| ## Assembly | ||
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| - genomescope was updated to [460fad600dce](https://toolshed.g2.bx.psu.edu/view/iuc/genomescope/460fad600dce) | ||
| - salsa was updated to [58a870ef434c](https://toolshed.g2.bx.psu.edu/view/iuc/salsa/58a870ef434c) | ||
| - unicycler was updated to [e022dff952df](https://toolshed.g2.bx.psu.edu/view/iuc/unicycler/e022dff952df) | ||
| - yahs was updated to [ff4031bfaa22](https://toolshed.g2.bx.psu.edu/view/iuc/yahs/ff4031bfaa22) | ||
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| ## Convert Formats | ||
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| - ucsc_maftoaxt was updated to [3a4256d4f079](https://toolshed.g2.bx.psu.edu/view/iuc/ucsc_maftoaxt/3a4256d4f079) | ||
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| ## Metagenomic Analysis | ||
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| - bracken was updated to [0c7b6eb7e752](https://toolshed.g2.bx.psu.edu/view/iuc/bracken/0c7b6eb7e752) | ||
| - customize_metaphlan_database was updated to [a755466eb47c](https://toolshed.g2.bx.psu.edu/view/iuc/customize_metaphlan_database/a755466eb47c) | ||
| - extract_metaphlan_database was updated to [4b6ac1f0042b](https://toolshed.g2.bx.psu.edu/view/iuc/extract_metaphlan_database/4b6ac1f0042b) | ||
| - krakentools_combine_kreports was updated to [4960abe31b4d](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_combine_kreports/4960abe31b4d) | ||
| - merge_metaphlan_tables was updated to [05ad7d35ce92](https://toolshed.g2.bx.psu.edu/view/iuc/merge_metaphlan_tables/05ad7d35ce92) | ||
| - metaphlan was updated to [b6897977d13e](https://toolshed.g2.bx.psu.edu/view/iuc/metaphlan/b6897977d13e) | ||
| - mg_toolkit_bulk_download was updated to [a5eeaeba30d9](https://toolshed.g2.bx.psu.edu/view/iuc/mg_toolkit_bulk_download/a5eeaeba30d9) | ||
| - recentrifuge was updated to [d4fbfd31696c](https://toolshed.g2.bx.psu.edu/view/iuc/recentrifuge/d4fbfd31696c) | ||
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| ## Mothur | ||
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| - mothur_align_seqs was updated to [152ae632ab19](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_align_seqs/152ae632ab19) | ||
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| ## Nanopore | ||
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| - clair3 was updated to [c8ba8286e7c0](https://toolshed.g2.bx.psu.edu/view/iuc/clair3/c8ba8286e7c0) | ||
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| ## Phylogenetics | ||
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| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
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| ## Single-cell | ||
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| - scanpy_cluster_reduce_dimension was updated to [64ff3ef24fae](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_cluster_reduce_dimension/64ff3ef24fae) | ||
| - scanpy_filter was updated to [aa0059118fb9](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/aa0059118fb9) | ||
| - scanpy_normalize was updated to [f3ad813a58a3](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_normalize/f3ad813a58a3) | ||
| - scanpy_plot was updated to [70fa84e99463](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/70fa84e99463) | ||
| - scanpy_remove_confounders was updated to [e66884b1c1a5](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_remove_confounders/e66884b1c1a5) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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| ## hca_sc_monocle3_tools | ||
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| - monocle3_reducedim was updated to [98f4918eee70](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/monocle3_reducedim/98f4918eee70) | ||
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| ## Muon Spectroscopy | ||
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| - mudirac was updated to [eaf0f01cc0f6](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/mudirac/eaf0f01cc0f6) | ||
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