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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-09-08 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-09-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #473](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#473/) | ||
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| ## Quality Control | ||
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| - multiqc was updated to [f7e2f1eb3a16](https://toolshed.g2.bx.psu.edu/view/iuc/multiqc/f7e2f1eb3a16) | ||
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| ## GIS Data Handling | ||
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| - hirondelle_crim was updated to [52baddd15640](https://toolshed.g2.bx.psu.edu/view/ecology/hirondelle_crim/52baddd15640) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## FASTA/FASTQ | ||
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| - pear was updated to [f69501361cec](https://toolshed.g2.bx.psu.edu/view/iuc/pear/f69501361cec) | ||
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| ## Proteomics | ||
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| - openms_fidoadapter was updated to [b552ec8456e7](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_fidoadapter/b552ec8456e7) | ||
| - openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Graph/Display Data | ||
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| - jbrowse2 was updated to [c4b77883c0a7](https://toolshed.g2.bx.psu.edu/view/fubar/jbrowse2/c4b77883c0a7) | ||
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| ## Imaging | ||
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| - bioimage_inference was updated to [b0f2d3b4a278](https://toolshed.g2.bx.psu.edu/view/bgruening/bioimage_inference/b0f2d3b4a278) | ||
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| ## Annotation | ||
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| - bakta was updated to [d77802fe76f7](https://toolshed.g2.bx.psu.edu/view/iuc/bakta/d77802fe76f7) | ||
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| ## Convert Formats | ||
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| - bioext_bam2msa was updated to [767943cd85bf](https://toolshed.g2.bx.psu.edu/view/iuc/bioext_bam2msa/767943cd85bf) | ||
| - crossmap_bam was updated to [6ee334657360](https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_bam/6ee334657360) | ||
| - crossmap_bed was updated to [50b7875a49d0](https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_bed/50b7875a49d0) | ||
| - crossmap_gff was updated to [75a08e10cc76](https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_gff/75a08e10cc76) | ||
| - crossmap_region was updated to [a50ef4d58c90](https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_region/a50ef4d58c90) | ||
| - crossmap_vcf was updated to [d4965adac10c](https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_vcf/d4965adac10c) | ||
| - crossmap_wig was updated to [f7229c8445da](https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_wig/f7229c8445da) | ||
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| ## Mapping | ||
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| - bioext_bealign was updated to [4ad7321205c9](https://toolshed.g2.bx.psu.edu/view/iuc/bioext_bealign/4ad7321205c9) | ||
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| ## Metagenomic Analysis | ||
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| - checkm_analyze was updated to [bcb8dc01f296](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_analyze/bcb8dc01f296) | ||
| - checkm_lineage_set was updated to [3693acdbf0d6](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_lineage_set/3693acdbf0d6) | ||
| - checkm_lineage_wf was updated to [8345d273ba82](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_lineage_wf/8345d273ba82) | ||
| - checkm_plot was updated to [9916308301da](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_plot/9916308301da) | ||
| - checkm_qa was updated to [5466420816b9](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_qa/5466420816b9) | ||
| - checkm_taxon_set was updated to [407e50329077](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_taxon_set/407e50329077) | ||
| - checkm_taxonomy_wf was updated to [19e4e2d98ebb](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_taxonomy_wf/19e4e2d98ebb) | ||
| - checkm_tetra was updated to [d0d9e52a46b8](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_tetra/d0d9e52a46b8) | ||
| - checkm_tree was updated to [ce3fd529a6ec](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_tree/ce3fd529a6ec) | ||
| - checkm_tree_qa was updated to [36ea6d5441c3](https://toolshed.g2.bx.psu.edu/view/iuc/checkm_tree_qa/36ea6d5441c3) | ||
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| ## Phylogenetics | ||
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| - hyphy_annotate was updated to [e6009f23582c](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_annotate/e6009f23582c) | ||
| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
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| ## RNA Analysis | ||
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| - edger was updated to [ae2aad0a6d50](https://toolshed.g2.bx.psu.edu/view/iuc/edger/ae2aad0a6d50) | ||
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| ## Variant Calling | ||
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| - ensembl_vep was updated to [e43f513583ee](https://toolshed.g2.bx.psu.edu/view/iuc/ensembl_vep/e43f513583ee) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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| ## Metabolomics | ||
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| - tracegroomer was updated to [5147f08d67c9](https://toolshed.g2.bx.psu.edu/view/iuc/tracegroomer/5147f08d67c9) | ||
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| ## hca_sc_scanpy_tools | ||
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| - scanpy_normalise_data was updated to [7852b823ad45](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_normalise_data/7852b823ad45) | ||
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