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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-03-24 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-03-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #437](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#437/) | ||
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| ## DNA Metabarcoding | ||
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| - obi_annotate was updated to [d50dc96e3ce9](https://toolshed.g2.bx.psu.edu/view/iuc/obi_annotate/d50dc96e3ce9) | ||
| - obi_clean was updated to [08d873cdd5f6](https://toolshed.g2.bx.psu.edu/view/iuc/obi_clean/08d873cdd5f6) | ||
| - obi_convert was updated to [e328ced6cf0a](https://toolshed.g2.bx.psu.edu/view/iuc/obi_convert/e328ced6cf0a) | ||
| - obi_grep was updated to [02bab5ff7c37](https://toolshed.g2.bx.psu.edu/view/iuc/obi_grep/02bab5ff7c37) | ||
| - obi_illumina_pairend was updated to [8cb6bd511879](https://toolshed.g2.bx.psu.edu/view/iuc/obi_illumina_pairend/8cb6bd511879) | ||
| - obi_ngsfilter was updated to [91a1ed0b486f](https://toolshed.g2.bx.psu.edu/view/iuc/obi_ngsfilter/91a1ed0b486f) | ||
| - obi_sort was updated to [b6d9ea2fb41b](https://toolshed.g2.bx.psu.edu/view/iuc/obi_sort/b6d9ea2fb41b) | ||
| - obi_stat was updated to [5f4544915893](https://toolshed.g2.bx.psu.edu/view/iuc/obi_stat/5f4544915893) | ||
| - obi_tab was updated to [4cf47c504672](https://toolshed.g2.bx.psu.edu/view/iuc/obi_tab/4cf47c504672) | ||
| - obi_uniq was updated to [d4bea99366f9](https://toolshed.g2.bx.psu.edu/view/iuc/obi_uniq/d4bea99366f9) | ||
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| ## Ecoregionalization | ||
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| - ecoregion_brt_analysis was updated to [f0d6938d0451](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_brt_analysis/f0d6938d0451) | ||
| - ecoregion_brt_analysis was updated to [f8962f1c832a](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_brt_analysis/f8962f1c832a) | ||
| - ecoregion_clara_cluster was updated to [24a81631a8b5](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_clara_cluster/24a81631a8b5) | ||
| - ecoregion_cluster_estimate was updated to [0f6542d0986e](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_cluster_estimate/0f6542d0986e) | ||
| - ecoregion_cluster_estimate was updated to [1b9522671e90](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_cluster_estimate/1b9522671e90) | ||
| - ecoregion_eco_map was updated to [374555fc30bd](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_eco_map/374555fc30bd) | ||
| - ecoregion_taxa_seeker was updated to [788b118910a7](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_taxa_seeker/788b118910a7) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## Proteomics | ||
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| - maxquant was updated to [9c52362ae7bb](https://toolshed.g2.bx.psu.edu/view/galaxyp/maxquant/9c52362ae7bb) | ||
| - metaquantome_db was updated to [e63db1aa82ee](https://toolshed.g2.bx.psu.edu/view/galaxyp/metaquantome_db/e63db1aa82ee) | ||
| - metaquantome_expand was updated to [767c1d761aaf](https://toolshed.g2.bx.psu.edu/view/galaxyp/metaquantome_expand/767c1d761aaf) | ||
| - metaquantome_filter was updated to [35cc7ca0bdc7](https://toolshed.g2.bx.psu.edu/view/galaxyp/metaquantome_filter/35cc7ca0bdc7) | ||
| - metaquantome_sample was updated to [06f6826d380c](https://toolshed.g2.bx.psu.edu/view/galaxyp/metaquantome_sample/06f6826d380c) | ||
| - metaquantome_stat was updated to [b9d453dca8d3](https://toolshed.g2.bx.psu.edu/view/galaxyp/metaquantome_stat/b9d453dca8d3) | ||
| - metaquantome_viz was updated to [8bd7734309f6](https://toolshed.g2.bx.psu.edu/view/galaxyp/metaquantome_viz/8bd7734309f6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Metagenomic Analysis | ||
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| - metagene_annotator was updated to [17c7ab82bfbc](https://toolshed.g2.bx.psu.edu/view/galaxyp/metagene_annotator/17c7ab82bfbc) | ||
| - phyloseq_from_biom was updated to [c0101c72b8af](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_biom/c0101c72b8af) | ||
| - srst2 was updated to [81cea47ec685](https://toolshed.g2.bx.psu.edu/view/iuc/srst2/81cea47ec685) | ||
| - virannot_blast2tsv was updated to [e889010415a1](https://toolshed.g2.bx.psu.edu/view/iuc/virannot_blast2tsv/e889010415a1) | ||
| - virannot_otu was updated to [c9dac9b2e01c](https://toolshed.g2.bx.psu.edu/view/iuc/virannot_otu/c9dac9b2e01c) | ||
| - virannot_rps2tsv was updated to [bbaa89f070f4](https://toolshed.g2.bx.psu.edu/view/iuc/virannot_rps2tsv/bbaa89f070f4) | ||
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| ## Annotation | ||
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| - repeatmodeler was updated to [4a172d211285](https://toolshed.g2.bx.psu.edu/view/csbl/repeatmodeler/4a172d211285) | ||
| - helixer was updated to [e3846dc36c4d](https://toolshed.g2.bx.psu.edu/view/genouest/helixer/e3846dc36c4d) | ||
| - abritamr was updated to [5aaffb8d8161](https://toolshed.g2.bx.psu.edu/view/iuc/abritamr/5aaffb8d8161) | ||
| - busco was updated to [ea8146ee148f](https://toolshed.g2.bx.psu.edu/view/iuc/busco/ea8146ee148f) | ||
| - mitos was updated to [e50a4f4542fc](https://toolshed.g2.bx.psu.edu/view/iuc/mitos/e50a4f4542fc) | ||
| - mitos2 was updated to [73b018c57e96](https://toolshed.g2.bx.psu.edu/view/iuc/mitos2/73b018c57e96) | ||
| - omark was updated to [6f570ba54b41](https://toolshed.g2.bx.psu.edu/view/iuc/omark/6f570ba54b41) | ||
| - red was updated to [db57bc3b57af](https://toolshed.g2.bx.psu.edu/view/iuc/red/db57bc3b57af) | ||
| - tsebra was updated to [681fd806acc4](https://toolshed.g2.bx.psu.edu/view/iuc/tsebra/681fd806acc4) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
| - data_manager_mapseq was updated to [4cd97cc67061](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_mapseq/4cd97cc67061) | ||
| - data_manager_omamer was updated to [e1502e4f8725](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_omamer/e1502e4f8725) | ||
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| ## Evolution | ||
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| - revoluzer_crex was updated to [e0b7c98f29bb](https://toolshed.g2.bx.psu.edu/view/iuc/revoluzer_crex/e0b7c98f29bb) | ||
| - revoluzer_distmat was updated to [af7528402a97](https://toolshed.g2.bx.psu.edu/view/iuc/revoluzer_distmat/af7528402a97) | ||
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| ## FASTA/FASTQ | ||
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| - cutadapt was updated to [944ae523bacb](https://toolshed.g2.bx.psu.edu/view/lparsons/cutadapt/944ae523bacb) | ||
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| ## Mapping | ||
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| - minimap2 was updated to [92678fcb1a5f](https://toolshed.g2.bx.psu.edu/view/iuc/minimap2/92678fcb1a5f) | ||
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| ## Multiple Alignments | ||
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| - mummer_delta_filter was updated to [e8fdceffea4c](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_delta_filter/e8fdceffea4c) | ||
| - mummer_dnadiff was updated to [5561a1193611](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_dnadiff/5561a1193611) | ||
| - mummer_mummer was updated to [57f042937ba7](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_mummer/57f042937ba7) | ||
| - mummer_mummerplot was updated to [fb43e8887350](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_mummerplot/fb43e8887350) | ||
| - mummer_nucmer was updated to [7cd7a55a678d](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_nucmer/7cd7a55a678d) | ||
| - mummer_show_coords was updated to [cf3c9489c088](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_show_coords/cf3c9489c088) | ||
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| ## Phylogenetics | ||
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| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
| - usher was updated to [335665e15630](https://toolshed.g2.bx.psu.edu/view/iuc/usher/335665e15630) | ||
| - usher was updated to [746b434c8fbb](https://toolshed.g2.bx.psu.edu/view/iuc/usher/746b434c8fbb) | ||
| - usher_matutils was updated to [79e2ee4e6ebb](https://toolshed.g2.bx.psu.edu/view/iuc/usher_matutils/79e2ee4e6ebb) | ||
| - usher_matutils was updated to [e0a0a473fc1e](https://toolshed.g2.bx.psu.edu/view/iuc/usher_matutils/e0a0a473fc1e) | ||
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| ## RNA Analysis | ||
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| - salmon was updated to [f4d5237a84f6](https://toolshed.g2.bx.psu.edu/view/bgruening/salmon/f4d5237a84f6) | ||
| - salmonquantmerge was updated to [a896b8b7d264](https://toolshed.g2.bx.psu.edu/view/bgruening/salmonquantmerge/a896b8b7d264) | ||
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| ## Single-cell | ||
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| - alevin was updated to [c9944a2600f1](https://toolshed.g2.bx.psu.edu/view/bgruening/alevin/c9944a2600f1) | ||
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| ## hca_sc_scanpy_tools | ||
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| - seurat_plot was updated to [95d79f1134f0](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_plot/95d79f1134f0) | ||
| - seurat_run_umap was updated to [b9424c715a0d](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_run_umap/b9424c715a0d) | ||
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