-
Notifications
You must be signed in to change notification settings - Fork 114
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
UseGalaxy.EU Jenkins Bot
committed
Mar 31, 2024
1 parent
29e87d1
commit e9eda49
Showing
1 changed file
with
102 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,102 @@ | ||
| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-03-31 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
|
|
||
| On 2024-03-31, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #438](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#438/) | ||
|
|
||
|
|
||
| ## Text Manipulation | ||
|
|
||
| - text_processing was updated to [fbf99087e067](https://toolshed.g2.bx.psu.edu/view/bgruening/text_processing/fbf99087e067) | ||
|
|
||
| ## Ecoregionalization | ||
|
|
||
| - ecoregion_geonearestneighbor was updated to [5cde56683579](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_geonearestneighbor/5cde56683579) | ||
|
|
||
| ## QIIME 2 | ||
|
|
||
| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
|
|
||
| ## Convert Formats | ||
|
|
||
| - graphicsmagick_image_compare was updated to [2a5a0b61a84e](https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_compare/2a5a0b61a84e) | ||
| - graphicsmagick_image_convert was updated to [f0de81b548eb](https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_convert/f0de81b548eb) | ||
| - graphicsmagick_image_montage was updated to [31dfed0f0eed](https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_montage/31dfed0f0eed) | ||
| - msconvert was updated to [545054b15d7c](https://toolshed.g2.bx.psu.edu/view/galaxyp/msconvert/545054b15d7c) | ||
| - bam2fastx was updated to [7f7f2ee03430](https://toolshed.g2.bx.psu.edu/view/iuc/bam2fastx/7f7f2ee03430) | ||
|
|
||
| ## Proteomics | ||
|
|
||
| - openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
|
|
||
| ## Assembly | ||
|
|
||
| - flye was updated to [291923e6f276](https://toolshed.g2.bx.psu.edu/view/bgruening/flye/291923e6f276) | ||
| - pretext_graph was updated to [eca7d3a0c5f2](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_graph/eca7d3a0c5f2) | ||
|
|
||
| ## Annotation | ||
|
|
||
| - compleasm was updated to [cfec9601b25d](https://toolshed.g2.bx.psu.edu/view/iuc/compleasm/cfec9601b25d) | ||
| - miniprot was updated to [6b20d051d0dc](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot/6b20d051d0dc) | ||
| - miniprot_index was updated to [aeb4c76d007b](https://toolshed.g2.bx.psu.edu/view/iuc/miniprot_index/aeb4c76d007b) | ||
| - mirmachine was updated to [85010d0eaa6c](https://toolshed.g2.bx.psu.edu/view/iuc/mirmachine/85010d0eaa6c) | ||
|
|
||
| ## FASTA/FASTQ | ||
|
|
||
| - seqkit_fx2tab was updated to [7dd90df319f6](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_fx2tab/7dd90df319f6) | ||
| - seqkit_locate was updated to [7e30613be1c6](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_locate/7e30613be1c6) | ||
| - seqkit_stats was updated to [fe1ae2ebf63d](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_stats/fe1ae2ebf63d) | ||
|
|
||
| ## Phylogenetics | ||
|
|
||
| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
| - pangolin was updated to [8ad84c5753ea](https://toolshed.g2.bx.psu.edu/view/iuc/pangolin/8ad84c5753ea) | ||
|
|
||
| ## SAM/BAM | ||
|
|
||
| - mosdepth was updated to [91d89a597aac](https://toolshed.g2.bx.psu.edu/view/iuc/mosdepth/91d89a597aac) | ||
|
|
||
| ## Send Data | ||
|
|
||
| - ena_upload was updated to [ea5e944f447d](https://toolshed.g2.bx.psu.edu/view/iuc/ena_upload/ea5e944f447d) | ||
|
|
||
| ## Single-cell | ||
|
|
||
| - baredsc_1d was updated to [769d815e4b0d](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/769d815e4b0d) | ||
| - baredsc_2d was updated to [a90f8efe08b4](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/a90f8efe08b4) | ||
| - baredsc_combine_1d was updated to [5b7c81b35b89](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/5b7c81b35b89) | ||
| - baredsc_combine_2d was updated to [02fc39c8610d](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/02fc39c8610d) | ||
|
|
||
| ## None | ||
|
|
||
| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
|
|
||
| ## Metabolomics | ||
|
|
||
| - dimet_abundance_plot was updated to [5e379358c023](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_abundance_plot/5e379358c023) | ||
| - dimet_bivariate_analysis was updated to [ed01c0809ae8](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_bivariate_analysis/ed01c0809ae8) | ||
| - dimet_differential_analysis was updated to [f8247afcd994](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_analysis/f8247afcd994) | ||
| - dimet_differential_multigroup_analysis was updated to [daefbae2aacf](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_multigroup_analysis/daefbae2aacf) | ||
| - dimet_enrichment_plot was updated to [b520764e0d98](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_enrichment_plot/b520764e0d98) | ||
| - dimet_isotopologues_plot was updated to [16c64719226c](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_isotopologues_plot/16c64719226c) | ||
| - dimet_metabologram was updated to [82fb756e71cf](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_metabologram/82fb756e71cf) | ||
| - dimet_pca_analysis was updated to [3b9226db8ab6](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_analysis/3b9226db8ab6) | ||
| - dimet_pca_plot was updated to [76c2567165fa](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_plot/76c2567165fa) | ||
| - dimet_timecourse_analysis was updated to [e814718ecb07](https://toolshed.g2.bx.psu.edu/view/iuc/dimet_timecourse_analysis/e814718ecb07) | ||
|
|
||
| ## hca_sc_scanpy_tools | ||
|
|
||
| - scanpy_scale_data was updated to [1bb1d4419c48](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_scale_data/1bb1d4419c48) | ||
|
|