This repository runs automated tests of several workflows against various Galaxy servers.
We are automatically running these workflows against UseGalaxy.eu, and we can test against your server too!
| Workflow | UseGalaxy.EU |
|---|---|
| GraphClust2/GC-lite.ga | |
| example1/wf3-shed-tools.ga | |
| example2/wf4-shed-tools.ga | |
| raceid3/raceid3_workflow.ga | |
| sklearn/adaboost/adaboost.ga | |
| sklearn/ard/ard.ga | |
| training/assembly/general-introduction/assembly-general-introduction.ga | |
| training/assembly/unicycler-assembly/unicycler.ga | |
| training/chip-seq/formation_of_super-structures_on_xi/formation_of_super_structures_on_xi.ga | |
| training/epigenetics/hicexplorer/hicexplorer.ga | |
| training/epigenetics/methylation-seq/methylation-seq.ga | |
| training/metagenomics/general-tutorial/amplicon.ga | |
| training/proteomics/metaproteomics/metaproteomics.ga | |
| training/proteomics/protein-id-sg-ps/protein-id-sg-ps.ga | |
| training/proteomics/protein_quant_sil/protein_quant_sil.ga | |
| training/sequence-analysis/mapping/mapping.ga | |
| training/sequence-analysis/quality-control/quality_control.ga | |
| training/sequence-analysis/ref-based-rad-seq/rad_seq_ref_based.ga | |
| training/statistics/machine_learning/classification/linear_SVC_classification.ga | |
| training/statistics/machine_learning/regression/gradient_boosting_regression.ga | |
| training/transcriptomics/ref-based/ref_based.ga | |
| training/transcriptomics/small_ncrna_clustering/blockclust_workflow.ga | |
| training/variant-analysis/dip/diploid.ga | |
| training/variant-analysis/mapping-by-sequencing/mapping_by_sequencing.ga | |
| training/variant-analysis/microbial-variants/microbial_variant_calling.ga | |
| training/proteomics/F1000_Metaproteomics_QueryTabular/F1000_Metaproteomics_QueryTabular.ga | |
| training/proteomics/F1000_Proteogenomics_QueryTabular/F1000_Proteogenomics_QueryTabular.ga | |
| training/transcriptomics/rna-seq-viz-with-volcanoplot/rna-seq-viz-with-volcanoplot.ga | |
| training/transcriptomics/rna-seq-viz-with-heatmap2/rna-seq-viz-with-heatmap2.ga | |
| training/computational-chemistry/bio3danalysis/MD_Analysis_using_Bio3D.ga | |
| training/computational-chemistry/bio3danalysis/gromacs.ga | |
| training/metabolomics/F1000_Metabolomics_Query_Tabular_Mass_Adjustment.ga |
An introduction to workflow testing and a tutorial can be found at the Galaxy Training Network.
Based off of jmchilton's template, except running tests against UseGalaxy.eu
You can use the command line tool jq to pretty-print the workflow .ga files:
cat wf.ga | jq . -S > out.gaor this webservice: https://jsonformatter.org/