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environment.yml
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name: hpipy
channels:
- anaconda
- conda-forge
- defaults
- bioconda
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- argcomplete=3.5.0=pyhd8ed1ab_0
- binutils_impl_linux-64=2.38=h2a08ee3_1
- binutils_linux-64=2.38.0=hc2dff05_0
- bioconductor-annotationdbi=1.64.1=r43hdfd78af_0
- bioconductor-biobase=2.62.0=r43ha9d7317_2
- bioconductor-biocgenerics=0.48.1=r43hdfd78af_2
- bioconductor-biostrings=2.70.1=r43ha9d7317_2
- bioconductor-data-packages=20231203=hdfd78af_0
- bioconductor-genomeinfodb=1.38.1=r43hdfd78af_1
- bioconductor-genomeinfodbdata=1.2.11=r43hdfd78af_1
- bioconductor-go.db=3.18.0=r43hdfd78af_0
- bioconductor-gosemsim=2.28.0=r43hf17093f_1
- bioconductor-iranges=2.36.0=r43ha9d7317_2
- bioconductor-keggrest=1.42.0=r43hdfd78af_0
- bioconductor-s4vectors=0.40.2=r43ha9d7317_2
- bioconductor-xvector=0.42.0=r43ha9d7317_2
- bioconductor-zlibbioc=1.48.0=r43ha9d7317_2
- biopython=1.80=py310h5764c6d_0
- blas=1.1=openblas
- blast=2.15.0=pl5321h6f7f691_1
- bottleneck=1.3.8=py310h1f7b6fc_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py310hc6cd4ac_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.27.0=hd590300_0
- ca-certificates=2024.8.30=hbcca054_0
- cairo=1.16.0=hb05425b_5
- cd-hit=4.8.1=h43eeafb_9
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.16.0=py310h2fee648_0
- colorama=0.4.6=py310h06a4308_0
- contourpy=1.2.0=py310hd41b1e2_0
- curl=8.9.1=hdbd6064_0
- cycler=0.12.1=pyhd8ed1ab_0
- cyrus-sasl=2.1.28=h52b45da_1
- dbus=1.13.18=hb2f20db_0
- diamond=2.1.9=h43eeafb_0
- entrez-direct=16.2=he881be0_1
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- expat=2.6.1=h59595ed_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.49.0=py310h2372a71_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=11.2.0=h1234567_1
- gcc_linux-64=11.2.0=h5c386dc_0
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=11.2.0=h1234567_1
- gfortran_linux-64=11.2.0=hc2dff05_0
- glib=2.78.4=h6a678d5_0
- glib-tools=2.78.4=h6a678d5_0
- graphite2=1.3.13=h59595ed_1003
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- gxx_impl_linux-64=11.2.0=h1234567_1
- gxx_linux-64=11.2.0=hc2dff05_0
- harfbuzz=7.3.0=h3d44ed6_1
- hmmer=3.3.2=h87f3376_2
- icu=73.2=h59595ed_0
- jinja2=3.1.4=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- jq=1.7.1=hd590300_0
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.20.1=h81ceb04_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- levenshtein=0.25.1=py310hc6cd4ac_1
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=16_linux64_openblas
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcups=2.3.3=h36d4200_3
- libcurl=8.9.1=h251f7ec_0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.6.1=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=11.2.0=h1234567_1
- libgcc-ng=13.2.0=h807b86a_5
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libglib=2.78.4=hdc74915_0
- libgomp=13.2.0=h807b86a_5
- libiconv=1.17=hd590300_2
- libidn2=2.3.7=hd590300_0
- liblapack=3.9.0=16_linux64_openblas
- libllvm10=10.0.1=he513fc3_3
- libllvm14=14.0.6=hcd5def8_4
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.43=h2797004_0
- libpq=12.17=hdbd6064_0
- libsqlite=3.45.1=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=11.2.0=h1234567_1
- libstdcxx-ng=13.2.0=h7e041cc_5
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.16=hd590300_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.12.7=hc051c1a_1
- libzlib=1.2.13=hd590300_5
- make=4.4.1=hb9d3cd8_0
- markupsafe=2.1.5=py310h2372a71_0
- matplotlib=3.8.0=py310hff52083_2
- matplotlib-base=3.8.0=py310h62c0568_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql=5.7.24=h721c034_2
- ncbi-vdb=3.1.1=h4ac6f70_1
- ncurses=6.4=h59595ed_2
- networkx=3.2.1=pyhd8ed1ab_0
- nomkl=1.0=h5ca1d4c_0
- nspr=4.35=h27087fc_0
- nss=3.98=h1d7d5a4_0
- numexpr=2.9.0=py310hc2d3c2e_100
- numpy=1.26.4=py310hb13e2d6_0
- olefile=0.47=pyhd8ed1ab_0
- oniguruma=6.9.9=hd590300_0
- openblas=0.3.21=pthreads_h320a7e8_3
- openjpeg=2.4.0=h3ad879b_0
- openpyxl=3.0.10=py310h5eee18b_0
- openssl=3.3.1=h4bc722e_2
- pandas=1.4.3=py310h6a678d5_0
- pango=1.50.14=heaa33ce_1
- pcre=8.45=h9c3ff4c_0
- pcre2=10.42=hcad00b1_0
- perl=5.32.1=7_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.19=pl5321h166bdaf_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321h166bdaf_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pillow=10.2.0=py310h5eee18b_0
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- pthread-stubs=0.4=h36c2ea0_1001
- pybind11-abi=4=hd8ed1ab_3
- pyqt=5.15.4=py310hd8f1fbe_0
- pyqt5-sip=12.9.0=py310hd8f1fbe_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.13=hd12c33a_1_cpython
- python-levenshtein=0.25.1=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.2=py310h5b4e0ec_0
- qt-main=5.15.2=h53bd1ea_10
- r-askpass=1.2.0=r43hb1dbf0f_1
- r-base=4.3.1=h1ae530e_0
- r-bit=4.0.5=r43hb1dbf0f_2
- r-bit64=4.0.5=r43hb1dbf0f_3
- r-bitops=1.0_8=r43hdb488b9_0
- r-blob=1.2.4=r43hc72bb7e_2
- r-cachem=1.1.0=r43hb1dbf0f_1
- r-cli=3.6.3=r43h0d4f4ea_1
- r-cpp11=0.5.0=r43hc72bb7e_0
- r-crayon=1.5.3=r43hc72bb7e_1
- r-curl=5.2.1=r43h6b349a7_1
- r-dbi=1.2.3=r43hc72bb7e_1
- r-fastmap=1.2.0=r43ha18555a_1
- r-glue=1.7.0=r43hb1dbf0f_1
- r-httr=1.4.7=r43hc72bb7e_1
- r-jsonlite=1.8.8=r43hb1dbf0f_1
- r-lifecycle=1.0.4=r43hc72bb7e_1
- r-memoise=2.0.1=r43hc72bb7e_3
- r-mime=0.12=r43hb1dbf0f_3
- r-openssl=2.2.1=r43h5bbf899_0
- r-pkgconfig=2.0.3=r43hc72bb7e_4
- r-plogr=0.2.0=r43hc72bb7e_1006
- r-png=0.1_8=r43h21f035c_2
- r-r6=2.5.1=r43hc72bb7e_3
- r-rcpp=1.0.13=r43h0d4f4ea_0
- r-rcurl=1.98_1.16=r43h6b349a7_0
- r-rlang=1.1.4=r43ha18555a_1
- r-rsqlite=2.3.7=r43h0d4f4ea_0
- r-sys=3.4.2=r43hb1dbf0f_2
- r-vctrs=0.6.5=r43h0d4f4ea_1
- rapidfuzz=3.9.6=py310hea249c9_0
- readline=8.2=h8228510_1
- requests=2.28.1=py310h06a4308_0
- rpy2=3.5.11=py310r43h1f7b6fc_3
- scipy=1.13.1=py310heeff2f4_0
- setuptools=69.1.1=pyhd8ed1ab_0
- simplegeneric=0.8.1=py_1
- sip=6.5.1=py310h122e73d_2
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.41.2=h5eee18b_0
- sysroot_linux-64=2.12=he073ed8_17
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h8bc8fbc_6
- toml=0.10.2=pyhd8ed1ab_0
- tomlkit=0.13.2=pyha770c72_0
- tornado=6.4=py310h2372a71_0
- tqdm=4.66.5=pyhd8ed1ab_0
- tzdata=2024a=h0c530f3_0
- tzlocal=5.2=py310hff52083_1
- unicodedata2=15.1.0=py310h2372a71_0
- urllib3=1.26.18=pyhd8ed1ab_0
- waiting=1.4.1=pyhd8ed1ab_0
- wget=1.20.3=ha35d2d1_1
- xmltodict=0.13.0=pyhd8ed1ab_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.4.6=h5eee18b_0
- yaml=0.2.5=h7f98852_2
- yq=3.4.3=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- charset-normalizer==2.0.4
- idna==3.3
- packaging==21.3
- pycparser==2.21
- pyparsing==3.0.4
- python-dateutil==2.8.2
- wheel==0.37.1