HuCOVaria

About

HuCOVaria (Human/COVID-19 Variants Interaction) is a web-tool designed to provide an atlas of Protein-Protein Interaction information between human proteins and SARS-CoV-2 variant proteins. It provides searchable parameters to filter through the 146,146 interactions involving 4,549 human genes across 12 different SARS-CoV-2 strains. It provides a searchable and downloadable table format and a basic network view to visualize the interactions.

To Populate the DB and run the server

1. Decompress the main dataset running tar -xvf files/master_slim.tar.gz -C files/.

2. Run python manage.py migrate to apply migrations.
3. Run python manage.py runserver {port} to run the application. Replace {port} with the actual port where it should be listening, or leave empty to use the default.

Compile and run with Docker (this will populate the DB automatically)

1. docker build -t hucovaria-app .
2. docker run -p 9018:9018 hucovaria-app