ISOVIS GROUP IN LINNEUNIVERSITETET, VÄXJÖ, SWEDEN (http://lnu.se)
SOURCE CODE REPOSITORY LOCATION: git://github.com/vadyalex/thesis.git
RELEASES LOCATION: http://sourceforge.net/projects/go-cluster/files/releases/
GENE ONTOLOGY AND CLUSTER GRAPHS FOR VISUALISATION ARE AVAILABLE: http://sourceforge.net/projects/go-cluster/files/data/
BY VLADYSLAV ALEKSAKHIN (vladyslav.aleksakhin at gmail.com)
SUPERVISER: PROF. DR. ANDREAS KERREN (andreas.kerren at lnu.se) CO-SUPERVISER: PH.D STUDENT ILIR JUSUFI (ilir.jusufi at lnu.se)
2009 - 2011
- Requirements
GoClusterViz is Java application make sure you have installed JRE version 5.0 or above and configured java in path.
- HOW TO RUN
GoClusterViz has builds for three main platform: Windows, Linux and MacOSX.
Under Windows just start:
GoClusterViz.bat
On Linux and MacOSX run from terminal:
GoClusterViz.sh
- LOAD DATA
Data graphs available on the sourceforge.net, location url is above.
Real data is located under "data" directory.
To load Gene Ontology andcluster graph use main menu:
"File -> Open GO graph" and select downloaded RealGOGraph.gml
"File -> Open cluster graph" and select RealClusterGraph.gml
- STARTUP PARAMETERS
It if possible to load graphs immediately after start:
./GoClusterViz.sh load --type=gml --go=/some/where/go.gml --cluster=/any/where/cluster.gml
./GoClusterViz.sh load --t=gml --g=/some/where/go.gml --c=/any/where/cluster.gml
To run using Maven
mvn clean compile exec:java -Dexec.mainClass=GoClusterViz "-Dexec.args=load --type=gml --go=data/GOGraph.gml --cluster=data/ClusterGraph.gml"