vcfhetcount.md

% VCFHETCOUNT(1) vcfhetcount (vcflib) | vcfhetcount (VCF metrics) % Erik Garrison and vcflib contributors

NAME

vcfhetcount

SYNOPSIS

vcfhetcount

DESCRIPTION

Calculate the heterozygosity rate: count the number of alternate alleles in heterozygous genotypes in all records in the vcf file

OPTIONS

outputs a count for each individual in the file

Type: metrics

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfhetcount.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.