LIver Surgery Analyser.
See our install notes for Linux, Mac OS and Windows
Get stable branche
git clone --recursive -b stable https://github.com/mjirik/lisa.git
or for current developement
git clone --recursive [email protected]:mjirik/lisa.git
or
git clone [email protected]:mjirik/lisa.git
git submodule update --init --recursive
or use Lisa in Ubuntu for VirtualBox
python mysetup.py -d
Object (usualy liver) extraction is started by organ_segmentation script
./lisa.sh
or
python lisa.py
Segmentation use two types of seeds wich are setted by left and right mouse button. For better volume measurement control use additional parameters for example "-mroi" and "-vs 0.8". If "-mroi" parameter is used you can select region of interest.
Vessel localization uses saved data (organ.pkl) from organ_segmentation:
python src/vessels_segmentation.py -bg -i organ.pkl
Now user interactivity is used to set threshold parametr.
Virtual liver resection is based on data stored in previous step (vessels.pkl).
python src/vessel_cut.py -oe -i vessels.pkl
In this script is selected cut on vessel by user interactivity. Resected and remaining volume is then calculated.
nosetests
