The who, what, and where of Voytek Lab repositories.
The following are stable and open-source programming packages developed and released by the Voytek Lab.
A python package for parameterizing neural power spectra.
Home Page - Github - Matlab wrapper
A python package for analyzing neural time series.
A python package for cycle-by-cycle analysis of waveforms.
We have developed a set of tutorial notebooks that we developed for a workshop that we ran at the 2022 and 2023 Society for Psychohysiological Research Conference in Vancouver, Canada. These cover the basics of the standard analyses related to the kind of research we do. For tutorials related to particular software packages, check their docsites.
A repository with code used in Smith et al., 2023 entitled "Magnetic seizure therapy and electroconvulsive therapy increase aperiodic activity".
A repository with code used in Smith, Kosik, van Engen, et al., 2023 entitled "Clinical EEG slowing induced by electroconvulsive therapy is better described by increased frontal aperiodic activity".
A repository with code used in Preston, Schaworonkow, Voytek, 2022 entitled "Oscillations and aperiodic activity: Evidence for dynamic changes in both during memory encoding".
A repository with code used in Donoghue & Voytek, 2022 entitled "Automated meta-analysis of the event-related potential (ERP) literature".
A repository with code used in Schaworonkow & Voytek, 2021b entitled "Longitudinal changes in aperiodic and periodic activity in electrophysiological recordings in the first seven months of life".
A repository with code used in Donoghue, Schaworonkow, Voytek, 2021 entitled "Methodological considerations for studying neural oscillations".
A repository with code used in Schaworonkow & Voytek, 2021a entitled "Enhancing oscillations in intracranial electrophysiological recordings with data-driven spatial filters".
A repository with code used in Donoghue et al., 2020 entitled "Parameterizing neural power spectra into periodic and aperiodic components".
A repository with code used in Gao et al., 2020 entitled "Neuronal timescales are functionally dynamic and shaped by cortical microarchitecture".
A repository with code used in Donoghue, Dominguez, Voytek, 2020 entitled "Electrophysiological Frequency Band Ratio Measures Conflate Periodic and Aperiodic Neural Activity".
A repository with code used in Trujillo et al., 2019, entitled "Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development".
A repository with code used in Cole & Voytek, 2019, entitled "Cycle-by-cycle analysis of neural oscillations".
A repository with code used in Cole & Voytek, 2018, entitled "Hippocampal theta bursting and waveform shape reflect CA1 spiking patterns".
A repository with code and data used in Cole et al., 2017, entitled "Nonsinusoidal beta oscillations reflect cortical pathophysiology in Parkinson's disease".
A repository with code and data used in Gao et al., 2017, entitled "Inferring synaptic excitation/inhibition balance from field potentials".
