#357 build ok + decaf + fastai

357_Synthcity/decaf_0.1.6.eb

@@ -0,0 +1,49 @@
+easyblock = 'PythonBundle'
+
+name = 'DECAF-synthetic-data'
+version = '0.1.6'
+
+homepage = 'https://github.com/vanderschaarlab/DECAF'
+description = """DEbiasing CAusal Fairness - 
+Generating Fair Synthetic Data Using Causally-Aware Generative Networks"""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('Python-bundle-PyPI', '2023.06'),
+    ('SciPy-bundle', '2023.07'),
+    ('PyTorch-Lightning', '2.2.1'),
+    ('PyTorch-bundle', '2.1.2'),
+    ('XGBoost', '2.0.2'),
+    ('scikit-learn', '1.3.1'),
+    ('networkx', '3.1'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+# unpin dependencies versions
+local_preinstallopts = (
+    "sed -i"
+    " -e 's/networkx>=2.0,<3.0/networkx/'"
+    " -e 's/pytorch-lightning<2.0/pytorch-lightning/'"
+    " %(builddir)s/%(name)s/DECAF-%(version)s/requirements.txt && "
+)
+
+exts_list = [
+    ('loguru', '0.7.2', {
+        'checksums': ['e671a53522515f34fd406340ee968cb9ecafbc4b36c679da03c18fd8d0bd51ac'],
+    }),
+    (name, version, {
+        'modulename': 'decaf',
+        'preinstallopts': local_preinstallopts,
+        'source_urls': ['https://github.com/vanderschaarlab/DECAF/archive/'],
+        'sources': ['v%(version)s.tar.gz'],
+        'checksums': ['8f34e99937d2ccc43bff97b310c371c450e27313c0801cdd36aa91664c8e3180'],
+    }),
+]
+
+sanity_check_commands = ["python -c 'from decaf import DECAF, DataModule'"]
+
+moduleclass = 'bio'

357_Synthcity/decaf_origo_0.1.1.eb

@@ -0,0 +1,53 @@
+easyblock = 'PythonBundle'
+
+name = 'DECAF-synthetic-data'
+version = '0.1.1'
+local_commit = "db6333a"
+
+homepage = 'https://github.com/trentkyono/DECAF'
+description = """DEbiasing CAusal Fairness."""
+
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('Python-bundle-PyPI', '2023.06'),
+    ('SciPy-bundle', '2023.07'),
+    ('PyTorch-Lightning', '2.2.1'),
+    ('PyTorch-bundle', '2.1.2'),
+    ('XGBoost', '2.0.2'),
+    ('scikit-learn', '1.3.1'),
+    ('networkx', '3.1'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+# unpin dependencies versions
+local_preinstallopts = (
+    "sed -i"
+    " -e 's/networkx == 2.\*/networkx/'"
+    " -e 's/numpy == 1.19.\*/numpy/'"
+    " -e 's/pytorch-lightning == 1.4.\*/pytorch-lightning/'"
+    " -e 's/torch == 1.9.\*/torch/'"
+    " -e 's/torchtext == 0.10.\*/torchtext/'"
+    " %(builddir)s/decaf_synthetic_data/DECAF-db6333aced375ef14961e06e805bf7412f378f29/requirements.txt && "
+)
+
+exts_list = [
+    ('loguru', '0.7.2', {
+        'checksums': ['e671a53522515f34fd406340ee968cb9ecafbc4b36c679da03c18fd8d0bd51ac'],
+    }),
+    ('decaf_synthetic_data', version, {
+        'modulename': 'decaf',
+        'preinstallopts': local_preinstallopts,
+        'source_urls': ['https://github.com/trentkyono/DECAF/archive/'],
+        'sources': [{'download_filename': 'db6333a.tar.gz', 'filename': '%(name)s-%(version)s-db6333a.tar.gz'}],
+        'checksums': ['9df50a5b4ee96a6dcf53e2d845702ad48ebdbb0a31bb0cb2968b2217a1c8886e'],
+    }),
+]
+
+sanity_check_commands = ["python -c 'from decaf import DECAF, DataModule'"]
+
+moduleclass = 'bio'

357_Synthcity/fastai.eb

@@ -0,0 +1,41 @@
+easyblock = 'PythonBundle'
+
+name = 'fastai'
+version = '2.7.15'
+
+homepage = 'https://www.fast.ai/'
+description = """The fastai deep learning library."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+use_pip = True
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('PyTorch-bundle', '2.1.2'),
+    ('matplotlib', '3.7.2'),
+    ('SciPy-bundle', '2023.07'),
+    ('PyYAML', '6.0'),
+    ('Pillow', '10.0.0'),
+    ('scikit-learn', '1.3.1'),
+    ('spaCy', '3.7.4'),
+]
+
+exts_list = [
+    ('fastdownload', '0.0.7', {
+        'checksums': ['20507edb8e89406a1fbd7775e6e2a3d81a4dd633dd506b0e9cf0e1613e831d6a'],
+    }),
+    ('fastcore', '1.5.54', {
+        'checksums': ['3f23dfadd77428be99558fdad66bf04c79a9c626e694c7404ede816ed8372987'],
+    }),
+    ('fastprogress', '1.0.3', {
+        'checksums': ['7a17d2b438890f838c048eefce32c4ded47197ecc8ea042cecc33d3deb8022f5'],
+    }),
+    (name, version, {
+        'checksums': ['f2cc20fd18cdf5ec738cc56d29d54de75887d48ad15f9d35cf50c38d3a856923'],
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'lib'

357_Synthcity/lifelines.eb

@@ -1,21 +1,22 @@
 easyblock = 'PythonBundle'
 
 name = 'lifelines'
-version = '0.29.0'
+version = '0.28.0'
 
 homepage = "https://lifelines.readthedocs.io/en/latest/"
 description = """lifelines is a complete survival analysis library, written in pure Python."""
 
 toolchain = {'name': 'foss', 'version': '2023a'}
 
+builddependencies = [('poetry', '1.5.1')]
 dependencies = [
     ('Python', '3.11.3'),
     ('SciPy-bundle', '2023.07'),
     ('matplotlib', '3.7.2'),
 ]
 
-sanity_pip_check = True
 use_pip = True
+sanity_pip_check = True
 
 exts_list = [
     ('wrapt', '1.16.0', {
@@ -37,7 +38,7 @@ exts_list = [
         'checksums': ['64dd7992a7aa5bbceb1e40679d0f01fc6f0ba12b7d23d78094a88c2edc68fba1'],
     }),
     (name, version, {
-        'checksums': ['a82315a5daf2ad29eabefff38b8422364a8a721721136a501c30ff861cac8759'],
+        'checksums': ['eecf726453fd409c94fef8a521f8e593bcd09337f920fe885131f01cfe58b25e'],
     }),
 ]