#357 updates sources

vscentrum · Aug 6, 2024 · 78a3dee · 78a3dee
1 parent 1b7bf46
commit 78a3dee
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Showing 8 changed files with 10 additions and 10 deletions.
diff --git a/357_Synthcity/2022b_version/ITK-2022b.eb b/357_Synthcity/2022b_version/ITK-2022b.eb
@@ -18,7 +18,7 @@ toolchainopts = {'pic': True, 'cstd': 'c++11'}
 
 github_account = 'InsightSoftwareConsortium'
 source_urls = [GITHUB_SOURCE]
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 patches = [
     'ITK-5.3.0_vtk-include.patch',
     'ITK-5.3.0_fix-compatibility-swig-4-1.patch',

diff --git a/357_Synthcity/2022b_version/MONAI-2022b.eb b/357_Synthcity/2022b_version/MONAI-2022b.eb
@@ -68,7 +68,7 @@ exts_list = [
     (name, version, {
         'preinstallopts': 'BUILD_MONAI=1',
         'source_urls': ['https://github.com/%(github_account)s/%(name)s/archive'],
-        'sources': ['%(version)s.tar.gz'],
+        'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'use_pip_extras': local_pip_extras,
         # 2 valid checksums, as source tarball provided by GitHub for MONAI 1.3.0 slightly changed at some point
         # see also https://github.com/easybuilders/easybuild-easyconfigs/issues/20617

diff --git a/357_Synthcity/2022b_version/OpenSlide-2022b.eb b/357_Synthcity/2022b_version/OpenSlide-2022b.eb
@@ -11,7 +11,7 @@ read whole-slide images (also known as virtual slides)."""
 toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
 
 source_urls = [GITHUB_SOURCE]
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 patches = ['%(name)s-%(version)s_large_file_support.patch']
 checksums = [
     # v3.4.1.tar.gz

diff --git a/357_Synthcity/2022b_version/decaf-2022b.eb b/357_Synthcity/2022b_version/decaf-2022b.eb
@@ -55,7 +55,7 @@ exts_list = [
         'modulename': 'decaf',
         # 'preinstallopts': local_preinstallopts,
         'source_urls': ['https://github.com/vanderschaarlab/DECAF/archive/'],
-        'sources': ['v%(version)s.tar.gz'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'checksums': ['8f34e99937d2ccc43bff97b310c371c450e27313c0801cdd36aa91664c8e3180'],
     }),
 ]

diff --git a/357_Synthcity/2022b_version/openslide-python-2022b.eb b/357_Synthcity/2022b_version/openslide-python-2022b.eb
@@ -9,7 +9,7 @@ description = "OpenSlide Python is a Python interface to the OpenSlide library."
 toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
 
 source_urls = ['https://github.com/openslide/openslide-python/archive']
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 checksums = ['3f56bc9d02ae4a5b7257cf5e35214c5cc45f429ff3d5ef849c6c8e2460c1f9cd']
 
 builddependencies = [('binutils', '2.39')]

diff --git a/357_Synthcity/2022b_version/pydicom-2022b.eb b/357_Synthcity/2022b_version/pydicom-2022b.eb
@@ -9,7 +9,7 @@ description = "Pure python package for DICOM medical file reading and writing."
 toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
 
 source_urls = [GITHUB_SOURCE]
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 checksums = ['42c06ed74331174111dd42c89db774a13fc472abe18015f22c5aba80cddb7843']
 
 builddependencies = [

diff --git a/357_Synthcity/2022b_version/redis-py-2022b.eb b/357_Synthcity/2022b_version/redis-py-2022b.eb
@@ -25,7 +25,7 @@ exts_list = [
     (name, version, {
         'modulename': 'redis',
         'source_urls': ['https://github.com/redis/redis-py/archive/refs/tags/'],
-        'sources': ['v%(version)s.tar.gz'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'checksums': ['0a40afc824a5a3b465db4ba868a056a83779482f22d7d003c48fca230d9fe93a'],
     }),
 ]

diff --git a/357_Synthcity/2022b_version/synthcity-2022b.eb b/357_Synthcity/2022b_version/synthcity-2022b.eb
@@ -315,9 +315,9 @@ exts_list = [
         'checksums': ['824f10482581f5211d3a435d8b14adcc6c21b38d952f00b6a792fc7c089788b1'],
     }),
     ('xgbse', '0.2.3', {
-        'preinstallopts': "sed -i  -e '45,49d' -e 's/pandas>=1.0.\*/pandas>=1.0.0/' setup.py && ",
+        'preinstallopts': local_xgbse_preinstallopts,
         'source_urls': ['https://github.com/loft-br/xgboost-survival-embeddings/archive/'],
-        'sources': ['v%(version)s.tar.gz'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'checksums': ['9e6b71539b2b533c00eddfe7681cdd541f393d9573594eca358d263b141c127d'],
     }),
     ('arfpy', '0.1.1', {
@@ -339,7 +339,7 @@ exts_list = [
     (name, version, {
         'preinstallopts': local_preinstallopts,
         'source_urls': ['https://github.com/vanderschaarlab/synthcity/archive/'],
-        'sources': ['v%(version)s.tar.gz'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'testinstall': True,
         'runtest': local_pretestopts + 'cd tests && pytest -vvvs -m "not slow" --durations=50',
         'checksums': ['122a8546cad35e3ac5c74cf81281252dec4dd3c7b1d7afe0f45ef785f89cc682'],