progress on #236 NGSpeciesID

236_NGSpeciesID/NGSpeciesID-0.3.0-foss-2022b.eb

@@ -0,0 +1,43 @@
+easyblock = 'PythonPackage'
+
+name = 'NGSpeciesID'
+version = '0.3.0'
+
+homepage = 'https://github.com/ksahlin/NGSpeciesID'
+description = "NGSpeciesID is a tool for clustering and consensus forming of targeted ONT reads."
+
+toolchain = {'name': 'foss', 'version': '2022b'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['71663ce280220d4e692cc6c3aea44f91e40b3143ed09a9462bdf2feb1d94aa9f']
+
+dependencies = [
+    ('Python', '3.10.8'),
+    ('python-parasail', '1.3.4'),
+    ('edlib', '1.3.9'),
+    # ('medaka', '1.6.0'),  # needed? TODO only for 2022a
+    # ('spoa', '4.0.7'),  # needed?
+    # ('Racon', '1.5.0'),  # needed? TODO only for 2022a
+    # ('minimap2', '2.26'),  # needed?
+]
+
+download_dep_fail = True
+use_pip = True
+sanity_pip_check = True
+
+# no proper namespace for NGSpeciesID
+options = {'modulename': 'modules.consensus'}
+
+# parasail requirements are too strict
+preinstallopts = "sed -i 's/parasail==/parasail>=/g' setup.py && "
+
+sanity_check_paths = {
+    'files': ['bin/NGSpeciesID'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ["NGSpeciesID --help"]
+
+sanity_pip_check = True
+
+moduleclass = 'bio'