Merge pull request #250 from waldronlab/sdgamboa-bioc-review #52
sdgamboacheck-bioc.yml
on: push
Matrix: build-check
docker-build-and-push
0s
Annotations
10 errors and 62 warnings
|
windows-latest (devel)
processing vignette 'bugphyzz.Rmd' failed with diagnostics:
|
|
windows-latest (devel)
Vignette re-building failed.
|
|
windows-latest (devel)
Failed to install 'bugphyzz' from local:
|
|
windows-latest (devel)
Process completed with exit code 1.
|
|
macOS-latest (devel)
--- re-building ‘bugphyzz.Rmd’ using rmarkdown
|
|
macOS-latest (devel)
processing vignette 'bugphyzz.Rmd' failed with diagnostics:
|
|
macOS-latest (devel)
Vignette re-building failed.
|
|
macOS-latest (devel)
Failed to install 'bugphyzz' from local:
|
|
macOS-latest (devel)
Process completed with exit code 1.
|
|
macOS-latest (devel)
No such keg: /opt/homebrew/Cellar/r
|
|
windows-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
|
|
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
|
|
macOS-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
harfbuzz 8.5.0 is already installed and up-to-date.
To reinstall 8.5.0, run:
brew reinstall harfbuzz
|
|
macOS-latest (devel)
macOS's Gatekeeper has been disabled for this Cask
|
|
macOS-latest (devel)
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
|
|
macOS-latest (devel)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
|
|
macOS-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
|
|
ubuntu-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|