update DISCRETE_TYPE_ATTRIBUTES

waldronlab · Dec 14, 2023 · ce677da · ce677da
1 parent f35bd3e
commit ce677da
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Showing 3 changed files with 38 additions and 36 deletions.
diff --git a/R/bacdive.R b/R/bacdive.R
@@ -311,6 +311,6 @@
   df[['Attribute_group']] <- df[['Attribute']]
   df[['Attribute']] <- df[['Attribute_value']]
   df[['Attribute_value']] <- TRUE
-  df[['Attribute_type']] <- 'discrete'
+  df[['Attribute_type']] <- 'discrete' # TODO Maybe remove this line? I don't think this is being used
   return(df)
 }
diff --git a/R/physiologies.R b/R/physiologies.R
@@ -170,7 +170,7 @@ showPhys <- function(which_names = 'all') {
       df <- .numericToRange(df)
     } else if (unique(df[['Attribute_type']] == 'range')) {
       df <- .modifyRange(df)
-    } else if (unique(df[['Attribute_type']] %in% .DISCRETE_ATTRIBUTE_TYPES)) {
+    } else if (unique(df[['Attribute_type']] %in% .DISCRETE_ATTRIBUTE_TYPES())) {
       df <- dplyr::filter(df, .data$Attribute_value == TRUE | .data$Attribute_value == FALSE)
     }
 
@@ -249,9 +249,11 @@ showPhys <- function(which_names = 'all') {
 }
 
 ## helper function for .importSpreadsheets
-.DISCRETE_ATTRIBUTE_TYPES <- c(
-  'multistate-intersection', 'multistate-union', 'binary'
-)
+.DISCRETE_ATTRIBUTE_TYPES <- function() {
+  fname <- system.file('extdata', 'spreadsheet_links.tsv', package = 'bugphyzz')
+  dat <- read.table(file = fname, header = TRUE, sep = '\t')
+  unique(dat[dat$trait_type == 'discrete',]$attribute_type)
+}
 
 ## Helper function for physiologies
 .addSourceInfo <- function(dat) {

diff --git a/inst/extdata/spreadsheet_links.tsv b/inst/extdata/spreadsheet_links.tsv
@@ -1,31 +1,31 @@
-physiology	ontology	attribute_type	link	source_link
-acetate producing	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQb6gDQdhCMWHLQdkzMM4bgTPPosYCZvjzJu4NyOYaSBGOCaOPoQh0OiUr4btnJ8EAWn7NiF-T9JaCE/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/1PGW4C8fkyZYUJKA8yAW7ZjWEB6QXYdoTb6wrNxatK2c
-aerophilicity	MICRO_0000491	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vQDC8VfkkOfN6MKGxrzMEoJjfgYIfpsJO-SxVr3pkUUChBNkMQ3YKaxSvDSSjjrPRf51nU3wbk-WWJp/pub?output=csv	https://docs.google.com/spreadsheets/d/1JgUzttAZf5Qu2obZ_2xXqsnEr_I1XKn_ZzNvrE6ssO4
-animal pathogen	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vT9s4PFd7NHr-1GMNyPexZ1KuNyj2u7ErC1Vq3-wAfroNNCG-Tu-y8gn3qKQ4C-URg1SIjOm9bGE4wQ/pub?output=csv	https://docs.google.com/spreadsheets/d/1Z9bWx4dAbCHXgtZI2Ep-0Www0DafSqsPvSr5M69CPlE
-antimicrobial resistance	NA	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vQmtXGNF7n8mGZKow2Kj2m5JPXsisau9T4TF_u53ovqeELiIVxrDUjaNbdGi-qiKanTKoO5xfba5LTq/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/1ldVVQr6zT9g_Bf6WsJtAjke8yyP-gLp8llMYh6bipag
-antimicrobial sensitivity	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vR0FdQpAD-xhkyIXgZMtC9oCmlbx77Cj1ncCyojm9oO410NBwJRhBNFl4hnd4HMlj2okxEKLvA8EPr2/pub?output=csv	https://docs.google.com/spreadsheets/d/1eTceiQnE8YRoYGDWRL6uQqG6Wx9PPsBXk2X6Pvq7p6M
-arrangement	NA	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vSgNXC-VPLmG8dUN8VAun_pbT0Y4-qJo6u9ozHGO8j7Weq6ymPaPw9kJUPl-RpHSYvtUgACo-SVHyk5/pub?output=csv	https://docs.google.com/spreadsheets/d/1qkNPdVDjpkdvZ-UtWeIrmWA3aYCInIQrseDDYqXiH-w
-biofilm forming	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vRduthxAWAhSLSoOgFNAmI8DX8ORerG1U6OmI8y6-5coe31pONYfISNsUE-e-E_eiyxtQzin6Xq9b0m/pub?output=csv	https://docs.google.com/spreadsheets/d/1H8Pon9zmivcN7mtrlLuTLF4IL_lN5wi_k93XRlhWlRg
-butyrate producing	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQPnLOpbFbfLvOb8fvC6A-WfzVNMDYRWOUsT4hIseDNgI7nwZGjVwg3KBkWeFtOBBLK0j-DRiZ-jtqG/pub?output=csv	https://docs.google.com/spreadsheets/d/1uPOIyeFD5ClPR2W2XyT6jAdD8FkgGuNBSl_8F2CT_uI
-COGEM pathogenicity rating	NA	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vQYZjtf0RcacNAe54pLOnzor2q0ZeK4cF19f-gjji7cHfrtOf3VuDPA-jSAKRNDNZoWQanyw2QCugRZ/pub?output=csv	https://docs.google.com/spreadsheets/d/19DrBFbAMGNvqf17yJ4HzuKQjJoRlMCVYTCtmyugoDjQ
-disease association	NA	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vQvmmfCe2iXNNR3oC73wXTgukNGNj6_i9qU_20kwpBITtrjn_zgNBK_w9-cfJYKsvXmgXWF_2P8ZMZF/pub?gid=546928968&single=true&output=csv	https://docs.google.com/spreadsheets/d/1MAtkI-UEc7T33BYvLBAkw4PDmEmNBroMVUi4KwN8cCc
-extreme environment	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSh82md-R7XuM6PMs4UY6DYCY99wgwMcY6PD-m-VoxbJJl_Ce9JWhKtTEdFLEMmzrUxDyrQtfLBCbKj/pub?output=csv	https://docs.google.com/spreadsheets/d/1ECo3h91E090gCLejDSTBYwTmUqAPE44JDJlbLzVkpbE
-gram stain	NA	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vRxQOO7O7oJDJrFbY3s1Y_rbouUSR3rM_a3kGlXgcVMys5pFLqmd00VjJh1adJBmh3xA3aM8r3Am2oC/pub?output=csv	https://docs.google.com/spreadsheets/d/1ygWBlBczB24fyL0DTPmTModCuEDi-1j1_rsYBZ5JEOc
-growth medium	NA	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vTLNLWfdNxo7NGNuJ4Pq6nji-7jQhO1glTHh1cQVS3j147WxbwhbWqhyI3FJR0I578o1hzeGbHwMOmY/pub?output=csv	https://docs.google.com/spreadsheets/d/1r7GIZWjBbmC-rRZYbHUwM31LGJ6YGexdZozYOvFZXVs
-growth temperature	NA	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vTWXUnR0_jkpZEE06C0GAypTGjOa2RnOPiLSmPiwAnaf2qS33hd-6GKG95CYDgKeSk6t4BFVjIAB_sh/pub?output=csv	https://docs.google.com/spreadsheets/d/1yJjKSd59tjpq1Oaifd7S3jFBWFe2ZU-kmxV4HtYJznc
-habitat	NA	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vQrR6R5nhANAU-CweaEp_X9P13eXiyq2A16_hOOREDYZuOqFS_4jAnI4JjihFmy3jAWtUW2V-4kZYPN/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/16WVR910o0p_CyiqYxSa1hkDTdtsAM4Oy8TlbZNIr7ys
-health associated	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQm5WlnrHECspbrKkrXpo7nAYD4YEllr2GYoc1rcxuchbXk26H2y_Foyx9kXefVFRU239982aCCb0Xv/pub?output=csv	https://docs.google.com/spreadsheets/d/1oKvcKub-2NnbwYsIyXPETt7nUl89RwTk5Vwzk1WX0j0
-hydrogen gas producing	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSpucXiYrMe_iYvnZDuNSNkRVnEWRQhykCCXoIvtmTiKAVUdkVnRYvl17nbwGqZDg2xVDwaUXccGYsF/pub?output=csv	https://docs.google.com/spreadsheets/d/14CNe6W0OmR5iY9lQU2IPFtYZsLd8a77ehR3lVJkx1A8
-isolation site	NA	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vR5qKaSI_iXovASXA2U8figFKFBRNOuuFcnr-wSedtGuxAu2m8IjHp1uD23NGTWK9NmnKcO0m7FfkIx/pub?output=csv	https://docs.google.com/spreadsheets/d/1QmwZcfoXhBdWPxTt6qa7hhMckHGV7c0lU2pTPpcSVfI
-lactate producing	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSDYef_4xX2-RVfxhz7XrHIglvHjB5a9bagpApN_zHNhnswhFXN7CRsaQr3pKW6bAyrh8b26tndxCFi/pub?output=csv	https://docs.google.com/spreadsheets/d/1Am4XPHK9zyEuPV1h1je2TmsSHLitJJOLPcuhN6-v_hk
-length	NA	range	https://docs.google.com/spreadsheets/d/e/2PACX-1vQkcQ7CJ0LjgE0928maxcVEiqq7QHl6vuosL7qdWaCMVuqHCDwsPJA7yNSeXm9FIip-mDRaU6pMk4Ww/pub?output=csv	https://docs.google.com/spreadsheets/d/1gtD-kPb3XEQF0HAFcMMx3Deunj5GxVchPHXWHF-ZK9w
-mutation rate per site per generation	NA	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vQxiU_sfIyCEcwua8vuCjbSCeZkUBsL1pnNxEK-985NAsCgy0sNbaSKuFMaU5ytPCQ86h9x2NEJsX-t/pub?output=csv	https://docs.google.com/spreadsheets/d/1YIlMJCwqtzU1v2hTrPOPbjhxjmj_t-ol6WvMLkkz1bs
-mutation rate per site per year	NA	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vQGJBifwNIYz6znmGAFgGtzaSNPhxU8qagDgl4BWLHKDcjs_gm11pEaLV7X01qdyeacmwYxalTrx0um/pub?output=csv	https://docs.google.com/spreadsheets/d/1K9KUScp1VeEkeXjJmKft_Rdr4xqlyD9Cx7eQpijzWMQ
-optimal ph	NA	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vQTIHjOUyJc7O6Y_w3QIj6wiZD2AA369oWByaS77XTP6VX2IhNgBULN4cccs4ZMD-dsLx9ggTBKOnlt/pub?output=csv	https://docs.google.com/spreadsheets/d/1gDnJXdauXn16X-AJB9tK_hVrZVL1PmHTPP7gS8w7KOM
-plant pathogenicity	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSLH__Hb4wPELYjnSsBR_FwJ4FHLUmx3KDO_pQG3CD9JqNyuugWbiBF9TBhXw9S5mSck2cbeY2ai77C/pub?output=csv	https://docs.google.com/spreadsheets/d/1Kgt6cS9Fo94bC38iFdRUF9EJS9KeA5ysPfDKakI4jwM
-shape	NA	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vSSBfC2jfuqioMyj891v-hYM-uL61-amoDNl0bufw5RwVOmjp5m2uNOKTeJsAsZVHFdujgjEAencl5E/pub?output=csv	https://docs.google.com/spreadsheets/d/1OpjfL-EIosX9iUg8nRxv03qpAx8iKo0FpcK_ZQokr-k
-spore shape	OMP_0008000	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vQSMzIaqrE8gCV20sDu_8VBmu1WkpQ_vngaWzLCK2qe5E8IJL7-sOF8qEY0sHeUEavvLHpKVp-vmUxh/pub?output=csv	https://docs.google.com/spreadsheets/d/1XPtnoqeSfJFwDC3QHsXuNrTSJpgIZgUpv4ZmSFtT38g
-width	NA	range	https://docs.google.com/spreadsheets/d/e/2PACX-1vR45vzAobXMOH1SCECpkBkIvxTsG5d8jAweSHaUst-gFKQcS0tTYUjivmLVByOLbFZgF59miCyF11TC/pub?output=csv	https://docs.google.com/spreadsheets/d/1Wc14Gp4nygdR6XNnZEJ5mZMJtCP6pniqa9GQOwzriNo
-genome size	NA	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vT3FGe5zB0y6l3x1s0Xlc41xHVdlCg2ddllxOrHcYabYmDtemwBCYa5ar86UCZaGJRdQomYihwN1niX/pub?output=csv	https://docs.google.com/spreadsheets/d/1LR0WnLf-trrGHLObcr4t2rs_4W4MHS21SZ8KoujF1k4
-coding genes	NA	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vTnz-m2zfMkOiPOEjZgq6Q04TNP44qsC1DUYcGnSuDT37k_jyIP9HavVw8qNgGcQU-H4mO8_zobnqTE/pub?output=csv	https://docs.google.com/spreadsheets/d/1MVQ3o4fRYA4EOjp9mNAF0AvyQ0SzzdTMoZXruAIHmb4
-sphingolipid producing	NA	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQsNoXw2Noa29eSM0kbn_MCMFGC40nTQffmBHqiqY0Aalax0tHVVjNZBg83t9p0vyLpoSxwkfoWwySL/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/1mVeLtc94SykCBBHhxxPhrbUgFopZ4OMWHrM_c5-grjU
+physiology	ontology	trait_type	attribute_type	link	source_link
+acetate producing	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQb6gDQdhCMWHLQdkzMM4bgTPPosYCZvjzJu4NyOYaSBGOCaOPoQh0OiUr4btnJ8EAWn7NiF-T9JaCE/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/1PGW4C8fkyZYUJKA8yAW7ZjWEB6QXYdoTb6wrNxatK2c
+aerophilicity	MICRO_0000491	discrete	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vQDC8VfkkOfN6MKGxrzMEoJjfgYIfpsJO-SxVr3pkUUChBNkMQ3YKaxSvDSSjjrPRf51nU3wbk-WWJp/pub?output=csv	https://docs.google.com/spreadsheets/d/1JgUzttAZf5Qu2obZ_2xXqsnEr_I1XKn_ZzNvrE6ssO4
+animal pathogen	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vT9s4PFd7NHr-1GMNyPexZ1KuNyj2u7ErC1Vq3-wAfroNNCG-Tu-y8gn3qKQ4C-URg1SIjOm9bGE4wQ/pub?output=csv	https://docs.google.com/spreadsheets/d/1Z9bWx4dAbCHXgtZI2Ep-0Www0DafSqsPvSr5M69CPlE
+antimicrobial resistance	NA	discrete	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vQmtXGNF7n8mGZKow2Kj2m5JPXsisau9T4TF_u53ovqeELiIVxrDUjaNbdGi-qiKanTKoO5xfba5LTq/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/1ldVVQr6zT9g_Bf6WsJtAjke8yyP-gLp8llMYh6bipag
+antimicrobial sensitivity	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vR0FdQpAD-xhkyIXgZMtC9oCmlbx77Cj1ncCyojm9oO410NBwJRhBNFl4hnd4HMlj2okxEKLvA8EPr2/pub?output=csv	https://docs.google.com/spreadsheets/d/1eTceiQnE8YRoYGDWRL6uQqG6Wx9PPsBXk2X6Pvq7p6M
+arrangement	NA	discrete	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vSgNXC-VPLmG8dUN8VAun_pbT0Y4-qJo6u9ozHGO8j7Weq6ymPaPw9kJUPl-RpHSYvtUgACo-SVHyk5/pub?output=csv	https://docs.google.com/spreadsheets/d/1qkNPdVDjpkdvZ-UtWeIrmWA3aYCInIQrseDDYqXiH-w
+biofilm forming	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vRduthxAWAhSLSoOgFNAmI8DX8ORerG1U6OmI8y6-5coe31pONYfISNsUE-e-E_eiyxtQzin6Xq9b0m/pub?output=csv	https://docs.google.com/spreadsheets/d/1H8Pon9zmivcN7mtrlLuTLF4IL_lN5wi_k93XRlhWlRg
+butyrate producing	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQPnLOpbFbfLvOb8fvC6A-WfzVNMDYRWOUsT4hIseDNgI7nwZGjVwg3KBkWeFtOBBLK0j-DRiZ-jtqG/pub?output=csv	https://docs.google.com/spreadsheets/d/1uPOIyeFD5ClPR2W2XyT6jAdD8FkgGuNBSl_8F2CT_uI
+COGEM pathogenicity rating	NA	discrete	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vQYZjtf0RcacNAe54pLOnzor2q0ZeK4cF19f-gjji7cHfrtOf3VuDPA-jSAKRNDNZoWQanyw2QCugRZ/pub?output=csv	https://docs.google.com/spreadsheets/d/19DrBFbAMGNvqf17yJ4HzuKQjJoRlMCVYTCtmyugoDjQ
+disease association	NA	discrete	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vQvmmfCe2iXNNR3oC73wXTgukNGNj6_i9qU_20kwpBITtrjn_zgNBK_w9-cfJYKsvXmgXWF_2P8ZMZF/pub?gid=546928968&single=true&output=csv	https://docs.google.com/spreadsheets/d/1MAtkI-UEc7T33BYvLBAkw4PDmEmNBroMVUi4KwN8cCc
+extreme environment	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSh82md-R7XuM6PMs4UY6DYCY99wgwMcY6PD-m-VoxbJJl_Ce9JWhKtTEdFLEMmzrUxDyrQtfLBCbKj/pub?output=csv	https://docs.google.com/spreadsheets/d/1ECo3h91E090gCLejDSTBYwTmUqAPE44JDJlbLzVkpbE
+gram stain	NA	discrete	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vRxQOO7O7oJDJrFbY3s1Y_rbouUSR3rM_a3kGlXgcVMys5pFLqmd00VjJh1adJBmh3xA3aM8r3Am2oC/pub?output=csv	https://docs.google.com/spreadsheets/d/1ygWBlBczB24fyL0DTPmTModCuEDi-1j1_rsYBZ5JEOc
+growth medium	NA	discrete	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vTLNLWfdNxo7NGNuJ4Pq6nji-7jQhO1glTHh1cQVS3j147WxbwhbWqhyI3FJR0I578o1hzeGbHwMOmY/pub?output=csv	https://docs.google.com/spreadsheets/d/1r7GIZWjBbmC-rRZYbHUwM31LGJ6YGexdZozYOvFZXVs
+growth temperature	NA	numeric	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vTWXUnR0_jkpZEE06C0GAypTGjOa2RnOPiLSmPiwAnaf2qS33hd-6GKG95CYDgKeSk6t4BFVjIAB_sh/pub?output=csv	https://docs.google.com/spreadsheets/d/1yJjKSd59tjpq1Oaifd7S3jFBWFe2ZU-kmxV4HtYJznc
+habitat	NA	discrete	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vQrR6R5nhANAU-CweaEp_X9P13eXiyq2A16_hOOREDYZuOqFS_4jAnI4JjihFmy3jAWtUW2V-4kZYPN/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/16WVR910o0p_CyiqYxSa1hkDTdtsAM4Oy8TlbZNIr7ys
+health associated	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQm5WlnrHECspbrKkrXpo7nAYD4YEllr2GYoc1rcxuchbXk26H2y_Foyx9kXefVFRU239982aCCb0Xv/pub?output=csv	https://docs.google.com/spreadsheets/d/1oKvcKub-2NnbwYsIyXPETt7nUl89RwTk5Vwzk1WX0j0
+hydrogen gas producing	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSpucXiYrMe_iYvnZDuNSNkRVnEWRQhykCCXoIvtmTiKAVUdkVnRYvl17nbwGqZDg2xVDwaUXccGYsF/pub?output=csv	https://docs.google.com/spreadsheets/d/14CNe6W0OmR5iY9lQU2IPFtYZsLd8a77ehR3lVJkx1A8
+isolation site	NA	discrete	multistate-union	https://docs.google.com/spreadsheets/d/e/2PACX-1vR5qKaSI_iXovASXA2U8figFKFBRNOuuFcnr-wSedtGuxAu2m8IjHp1uD23NGTWK9NmnKcO0m7FfkIx/pub?output=csv	https://docs.google.com/spreadsheets/d/1QmwZcfoXhBdWPxTt6qa7hhMckHGV7c0lU2pTPpcSVfI
+lactate producing	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSDYef_4xX2-RVfxhz7XrHIglvHjB5a9bagpApN_zHNhnswhFXN7CRsaQr3pKW6bAyrh8b26tndxCFi/pub?output=csv	https://docs.google.com/spreadsheets/d/1Am4XPHK9zyEuPV1h1je2TmsSHLitJJOLPcuhN6-v_hk
+length	NA	range	range	https://docs.google.com/spreadsheets/d/e/2PACX-1vQkcQ7CJ0LjgE0928maxcVEiqq7QHl6vuosL7qdWaCMVuqHCDwsPJA7yNSeXm9FIip-mDRaU6pMk4Ww/pub?output=csv	https://docs.google.com/spreadsheets/d/1gtD-kPb3XEQF0HAFcMMx3Deunj5GxVchPHXWHF-ZK9w
+mutation rate per site per generation	NA	numeric	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vQxiU_sfIyCEcwua8vuCjbSCeZkUBsL1pnNxEK-985NAsCgy0sNbaSKuFMaU5ytPCQ86h9x2NEJsX-t/pub?output=csv	https://docs.google.com/spreadsheets/d/1YIlMJCwqtzU1v2hTrPOPbjhxjmj_t-ol6WvMLkkz1bs
+mutation rate per site per year	NA	numeric	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vQGJBifwNIYz6znmGAFgGtzaSNPhxU8qagDgl4BWLHKDcjs_gm11pEaLV7X01qdyeacmwYxalTrx0um/pub?output=csv	https://docs.google.com/spreadsheets/d/1K9KUScp1VeEkeXjJmKft_Rdr4xqlyD9Cx7eQpijzWMQ
+optimal ph	NA	numeric	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vQTIHjOUyJc7O6Y_w3QIj6wiZD2AA369oWByaS77XTP6VX2IhNgBULN4cccs4ZMD-dsLx9ggTBKOnlt/pub?output=csv	https://docs.google.com/spreadsheets/d/1gDnJXdauXn16X-AJB9tK_hVrZVL1PmHTPP7gS8w7KOM
+plant pathogenicity	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vSLH__Hb4wPELYjnSsBR_FwJ4FHLUmx3KDO_pQG3CD9JqNyuugWbiBF9TBhXw9S5mSck2cbeY2ai77C/pub?output=csv	https://docs.google.com/spreadsheets/d/1Kgt6cS9Fo94bC38iFdRUF9EJS9KeA5ysPfDKakI4jwM
+shape	NA	discrete	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vSSBfC2jfuqioMyj891v-hYM-uL61-amoDNl0bufw5RwVOmjp5m2uNOKTeJsAsZVHFdujgjEAencl5E/pub?output=csv	https://docs.google.com/spreadsheets/d/1OpjfL-EIosX9iUg8nRxv03qpAx8iKo0FpcK_ZQokr-k
+spore shape	OMP_0008000	discrete	multistate-intersection	https://docs.google.com/spreadsheets/d/e/2PACX-1vQSMzIaqrE8gCV20sDu_8VBmu1WkpQ_vngaWzLCK2qe5E8IJL7-sOF8qEY0sHeUEavvLHpKVp-vmUxh/pub?output=csv	https://docs.google.com/spreadsheets/d/1XPtnoqeSfJFwDC3QHsXuNrTSJpgIZgUpv4ZmSFtT38g
+width	NA	range	range	https://docs.google.com/spreadsheets/d/e/2PACX-1vR45vzAobXMOH1SCECpkBkIvxTsG5d8jAweSHaUst-gFKQcS0tTYUjivmLVByOLbFZgF59miCyF11TC/pub?output=csv	https://docs.google.com/spreadsheets/d/1Wc14Gp4nygdR6XNnZEJ5mZMJtCP6pniqa9GQOwzriNo
+genome size	NA	numeric	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vT3FGe5zB0y6l3x1s0Xlc41xHVdlCg2ddllxOrHcYabYmDtemwBCYa5ar86UCZaGJRdQomYihwN1niX/pub?output=csv	https://docs.google.com/spreadsheets/d/1LR0WnLf-trrGHLObcr4t2rs_4W4MHS21SZ8KoujF1k4
+coding genes	NA	numeric	numeric	https://docs.google.com/spreadsheets/d/e/2PACX-1vTnz-m2zfMkOiPOEjZgq6Q04TNP44qsC1DUYcGnSuDT37k_jyIP9HavVw8qNgGcQU-H4mO8_zobnqTE/pub?output=csv	https://docs.google.com/spreadsheets/d/1MVQ3o4fRYA4EOjp9mNAF0AvyQ0SzzdTMoZXruAIHmb4
+sphingolipid producing	NA	discrete	binary	https://docs.google.com/spreadsheets/d/e/2PACX-1vQsNoXw2Noa29eSM0kbn_MCMFGC40nTQffmBHqiqY0Aalax0tHVVjNZBg83t9p0vyLpoSxwkfoWwySL/pub?gid=0&single=true&output=csv	https://docs.google.com/spreadsheets/d/1mVeLtc94SykCBBHhxxPhrbUgFopZ4OMWHrM_c5-grjU